R/MSstats_functions.R
artmsSpectralCounts.RdOutputs the spectral counts from the MaxQuant evidence file.
artmsSpectralCounts( evidence_file, keys_file, output_file = NULL, verbose = TRUE )
| evidence_file | (char) Maxquant evidence file or data object |
|---|---|
| keys_file | (char) Keys file with the experimental design or data object |
| output_file | (char) Output file name (add |
| verbose | (logical) |
A txt file with biological replicates, protein id, and spectral count columns
summary_spectral_counts <- artmsSpectralCounts( evidence_file = artms_data_ph_evidence, keys_file = artms_data_ph_keys)#>#>