@@ -1,11 +1,11 @@

 Package: Biobase

 Title: Biobase: Base functions for Bioconductor

-Version: 2.41.0

+Version: 2.41.1

 Author: R. Gentleman, V. Carey, M. Morgan, S. Falcon

 Description: Functions that are needed by many other packages or which

         replace R functions.

 Suggests: tools, tkWidgets, ALL, RUnit, golubEsets

-Depends: R (>= 2.10), BiocGenerics (>= 0.3.2), utils

+Depends: R (>= 2.10), BiocGenerics (>= 0.27.1), utils

 Imports: methods

 Maintainer: Bioconductor Package Maintainer

         <[email protected]>

@@ -3,6 +3,7 @@ useDynLib(Biobase, copyEnv_sym=copyEnv, sublist_extract)

 import(methods)

 importFrom(BiocGenerics,

+    dims,

     combine,

     updateObject, updateObjectFromSlots, getObjectSlots,

     annotation, "annotation<-"

@@ -10,7 +10,6 @@ setGeneric("content",         function(object) standardGeneric("content"))

 setGeneric("description",     function(object, ...)

            standardGeneric("description"))

 setGeneric("description<-",   function(object, value) standardGeneric("description<-"))

-setGeneric("dims",            function(object) standardGeneric("dims"))

 setGeneric("dimnames")

 setGeneric("dimnames<-")

 setGeneric("dimLabels",       function(object) standardGeneric("dimLabels"))

@@ -349,7 +349,7 @@ setReplaceMethod("dimnames", "eSet", function(x, value) {

 setMethod("dim", "eSet", function(x) assayDataDim(assayData(x)))

-setMethod("dims", "eSet", function(object) assayDataDims(assayData(object)))

+setMethod("dims", "eSet", function(x) assayDataDims(assayData(x)))

 setMethod("[", "eSet", function(x, i, j, ..., drop = FALSE) {

   if (missing(drop))

@@ -27,6 +27,7 @@

 \alias{dimnames,eSet-method}

 \alias{dimnames<-,eSet-method}

 \alias{dim,eSet-method}

+\alias{dims}

 \alias{dims,eSet-method}

 \alias{experimentData,eSet-method}

 \alias{experimentData<-,eSet,MIAME-method}

deleted file mode 100644

@@ -1,23 +0,0 @@

-\name{dims}

-\alias{dims}

-

-\title{Retrieve dimensions of all elements in a list or environment}

-\description{

-  This function returns the dimensions of element members in lists or

-  environments such as \code{AssayData-class}.

-}

-\usage{

-dims(object)

-}

-\arguments{

-  \item{object}{List or environment object containing one or several matrices}

-}

-\value{

-  matrix of row and column dimensions, (in rows) for each element in

-  \code{object} (columns). 

-}

-\author{Biocore}

-

-\seealso{\code{\link{eSet-class}}}

-

-\keyword{manip}