git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Biobase@44936 bc3139a8-67e5-0310-9ffc-ced21a209358
Martin Morgan authored on 28/02/2010 22:39:00
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Package: Biobase |
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Title: Biobase: Base functions for Bioconductor |
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-Version: 2.7.4 |
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+Version: 2.7.5 |
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Author: R. Gentleman, V. Carey, M. Morgan, S. Falcon |
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Description: Functions that are needed by many other packages or which replace R functions. |
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Suggests: tools, tkWidgets, ALL |
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- ************************************************** |
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- * * |
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- * 2.11 SERIES NEWS * |
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- * * |
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- ************************************************** |
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+CHANGES IN VERSION 2.7 |
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+---------------------- |
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USER VISIBLE CHANGES |
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o 'snpCall' 'snpCallProbability' accessors added for SnpSet. |
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- ************************************************** |
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- * * |
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- * 2.10 SERIES NEWS * |
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- * * |
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- ************************************************** |
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+BUG FIXES |
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+ |
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+ o 'selectSome' returns short factors as character() |
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+ |
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+ |
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+CHANGES IN VERSION 2.5 |
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+---------------------- |
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USER VISIBLE CHANGES |
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o 'sampleNames,NChannelSet-method' returns a vector when the |
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sample names of each channel are the same. |
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- ************************************************** |
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- * * |
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- * 2.8 SERIES NEWS * |
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- * * |
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- ************************************************** |
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+ |
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+CHANGES IN VERSION 2.1 |
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+---------------------- |
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NEW FEATURES |
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o openPDF now checks for NULL or zero-length pdfviewer option |
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- ************************************************** |
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- * * |
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- * 2.7 SERIES NEWS * |
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- * * |
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- ************************************************** |
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+ |
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+CHANGES IN VERSION 2.0 |
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+---------------------- |
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SIGNIFICANT USER-VISIBLE CHANGES |
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@@ -70,10 +65,14 @@ BUG FIXES |
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NEWLY DEFUNCT CLASSES, METHODS, FUNCTIONS, DATA SETS |
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o Defunct S4 Classes |
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- 1) annotatedDataset - class definition still exits to support phenoData conversion |
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+ |
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+ 1) annotatedDataset - class definition still exits to support |
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+ phenoData conversion |
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2) exprMatrix - removed class definition |
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- 3) exprSet - class definition still exists to allow conversion to ExpressionSet |
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- 4) phenoData - class definition still exists to allow conversion to AnnotatedDataFrame |
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+ 3) exprSet - class definition still exists to allow conversion |
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+ to ExpressionSet |
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+ 4) phenoData - class definition still exists to allow |
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+ conversion to AnnotatedDataFrame |
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o Defunct Generics/Methods |
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1) addVarMetadataEntry - S4 generic definition removed |