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@@ -1,7 +1,7 @@ |
| 1 | 1 |
Package: COMPASS |
| 2 | 2 |
Type: Package |
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Title: Combinatorial Polyfunctionality Analysis of Single Cells |
| 4 |
-Version: 1.19.0 |
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+Version: 1.19.1 |
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Date: 2014-07-11 |
| 6 | 6 |
Author: Lynn Lin, Kevin Ushey, Greg Finak, Ravio Kolde (pheatmap) |
| 7 | 7 |
Authors@R: c( person("Lynn", "Lin", role="aut", email="[email protected]"),
|
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@@ -14,14 +14,14 @@ Getting Started |
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|
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Install the release version of `COMPASS` with: |
| 16 | 16 |
|
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- library(BiocInstaller) |
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- biocLite("COMPASS")
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|
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+ library(BiocManager) |
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+ BiocManager::install("COMPASS")
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|
| 19 | 19 |
|
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or the development version with: |
| 21 | 21 |
|
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- library(BiocInstaller) |
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+ library(BiocManager) |
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useDevel() |
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- biocLite("COMPASS")
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|
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+ BiocManager::install("COMPASS")
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|
| 25 | 25 |
|
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To get an idea of how to use `COMPASS`, read |
| 27 | 27 |
[the vignette](http://www.bioconductor.org/packages/devel/bioc/vignettes/COMPASS/inst/doc/COMPASS.html). |
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@@ -31,8 +31,8 @@ We'll assume that the data are provided as an `excel` document. We'll use some o |
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We need a good package to load the excel file, we'll use the tidyverse pacakge `readxl`. If it's not installed, you can install it with the command |
| 32 | 32 |
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```{r install_readxl, eval=FALSE}
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-library(BiocInstaller) |
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-biocLite("readxl")
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+library(BiocManager) |
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+BiocManager::install("readxl")
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``` |
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```{r load_readxl}
|
