yingxinlin authored on 12/04/2020 16:17:45
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@@ -22,7 +22,7 @@ A plot visualising the HTO expression |
| 22 | 22 |
A function to plot HTO expression |
| 23 | 23 |
} |
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\examples{
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-data(CITEseq_example) |
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+data(CITEseq_example, package = "CiteFuse") |
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sce_citeseq <- preprocessing(CITEseq_example) |
| 27 | 27 |
sce_citeseq <- normaliseExprs(sce = sce_citeseq, |
| 28 | 28 |
altExp_name = "HTO", |
yingxinlin authored on 12/04/2020 15:42:00
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@@ -22,7 +22,7 @@ A plot visualising the HTO expression |
| 22 | 22 |
A function to plot HTO expression |
| 23 | 23 |
} |
| 24 | 24 |
\examples{
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-data("CITEseq_example", package = "CiteFuse")
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+data(CITEseq_example) |
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| 26 | 26 |
sce_citeseq <- preprocessing(CITEseq_example) |
| 27 | 27 |
sce_citeseq <- normaliseExprs(sce = sce_citeseq, |
| 28 | 28 |
altExp_name = "HTO", |
yingxinlin authored on 11/03/2020 03:19:26
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@@ -21,3 +21,12 @@ A plot visualising the HTO expression |
| 21 | 21 |
\description{
|
| 22 | 22 |
A function to plot HTO expression |
| 23 | 23 |
} |
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+\examples{
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+data("CITEseq_example", package = "CiteFuse")
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+sce_citeseq <- preprocessing(CITEseq_example) |
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+sce_citeseq <- normaliseExprs(sce = sce_citeseq, |
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+altExp_name = "HTO", |
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+transform = "log") |
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+plotHTO(sce_citeseq, 1:4) |
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+ |
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+} |
yingxinlin authored on 10/03/2020 12:07:57
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@@ -2,9 +2,9 @@ |
| 2 | 2 |
% Please edit documentation in R/QCfunctions.R |
| 3 | 3 |
\name{plotHTO}
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\alias{plotHTO}
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-\title{A function to plot HTO expression}
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+\title{plotHTO}
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| 6 | 6 |
\usage{
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-plotHTO(sce, which_idx = 1:2, altExp_name = NULL, ncol = 2) |
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+plotHTO(sce, which_idx = seq_len(2), altExp_name = NULL, ncol = 2) |
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| 8 | 8 |
} |
| 9 | 9 |
\arguments{
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| 10 | 10 |
\item{sce}{sce}
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| ... | ... |
@@ -15,6 +15,9 @@ plotHTO(sce, which_idx = 1:2, altExp_name = NULL, ncol = 2) |
| 15 | 15 |
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\item{ncol}{ncol}
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} |
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+\value{
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+A plot visualising the HTO expression |
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+} |
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| 18 | 21 |
\description{
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| 19 | 22 |
A function to plot HTO expression |
| 20 | 23 |
} |
YingxinLin authored on 25/11/2019 07:38:08
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new file mode 100644 |
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@@ -0,0 +1,20 @@ |
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+% Generated by roxygen2: do not edit by hand |
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+% Please edit documentation in R/QCfunctions.R |
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+\name{plotHTO}
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+\alias{plotHTO}
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+\title{A function to plot HTO expression}
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+\usage{
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+plotHTO(sce, which_idx = 1:2, altExp_name = NULL, ncol = 2) |
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+} |
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+\arguments{
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+\item{sce}{sce}
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+ |
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+\item{which_idx}{which_idx}
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+ |
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+\item{altExp_name}{altExp_name}
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+ |
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+\item{ncol}{ncol}
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+} |
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+\description{
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+A function to plot HTO expression |
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+} |