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<title>A Shiny Application for Quality Control, Filtering and Trimming of FASTQ Files • FastqCleaner</title>
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<meta property="og:description" content="An interactive web application for quality control, filtering and trimming of FASTQ files. This user-friendly tool combines a pipeline for data processing based on Biostrings and ShortRead infrastructure, with a cutting-edge visual environment.
Single-Read and Paired-End files can be locally processed. Diagnostic interactive plots (CG content, per-base sequence quality, etc.) are provided for both the input and output files.">
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<p><span><div class="page-header"><h1> FastqCleaner <a href="https://travis-ci.org/leandroroser/FastqCleaner"><img src="https://travis-ci.org/leandroroser/FastqCleaner.svg?branch=master" alt="Build Status"></a> <a href="https://ci.appveyor.com/project/leandroroser/FastqCleaner"><img src="https://ci.appveyor.com/api/projects/status/github/leandroroser/FastqCleaner?branch=master&svg=true" alt="AppVeyor Build Status"></a> <a href=""><img src="https://img.shields.io/badge/R%3E%3D-3.0-red.svg" alt="R"></a> <a href=""><img src="https://img.shields.io/cran/l/devtools.svg" alt="CRAN"></a> </h1></div> </span></p>
<p>A Shiny web-app to clean FASTQ files with R and Bioconductor</p>
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<h2 class="hasAnchor">
<a href="#this-is-a-development-repository" class="anchor"></a>This is a development repository</h2>
<div id="please-install-the-application-using-the-canonical-way-using-bioconductor" class="section level3">
<h3 class="hasAnchor">
<a href="#please-install-the-application-using-the-canonical-way-using-bioconductor" class="anchor"></a>Please install the application using the canonical way using Bioconductor</h3>
<p>if (!requireNamespace(“BiocManager”, quietly = TRUE)) install.packages(“BiocManager”) BiocManager::install(“FastqCleaner”)</p>
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<li>Download from BIOC at <br><a href="https://www.bioconductor.org/packages/FastqCleaner">https://www.bioconductor.org/packages/FastqCleaner</a>
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<a href="https://opensource.org/licenses/mit-license.php">MIT</a> + file <a href="LICENSE-text.html">LICENSE</a>
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<h2>Developers</h2>
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<li>Leandro Roser <br><small class="roles"> Author, maintainer </small> </li>
<li>Fernán Agüero <br><small class="roles"> Author </small> </li>
<li>Daniel Sánchez <br><small class="roles"> Author </small> </li>
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<p>Developed by Leandro Roser, Fernán Agüero, Daniel Sánchez.</p>
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