1 | 1 |
new file mode 100644 |
... | ... |
@@ -0,0 +1,93 @@ |
1 |
+ |
|
2 |
+panel1Input <- function (id) { |
|
3 |
+ ns <- NS(id) |
|
4 |
+ |
|
5 |
+ |
|
6 |
+ tabPanel("File Operations", sidebarLayout( |
|
7 |
+ |
|
8 |
+ sidebarPanel(width = 3, class = "sideBar", |
|
9 |
+ h3("FastqCleaner"), |
|
10 |
+ p("A program to clean FASTQ files"), |
|
11 |
+ br(), |
|
12 |
+ hr(), |
|
13 |
+ br(), |
|
14 |
+ div() # .well.sideBar div |
|
15 |
+ ), |
|
16 |
+ |
|
17 |
+ mainPanel( |
|
18 |
+ |
|
19 |
+ # input/output --------------------------------- |
|
20 |
+ fluidRow( |
|
21 |
+ br(), |
|
22 |
+ column(6, class = "left", |
|
23 |
+ h3(class = "blackTag", "Input/Output")), |
|
24 |
+ column(3, class = "right"), |
|
25 |
+ br(), br(), br(), br(), br() |
|
26 |
+ ), |
|
27 |
+ |
|
28 |
+ fluidRow( |
|
29 |
+ column(6, |
|
30 |
+ p(class = "results", "File input:"), |
|
31 |
+ div(style = "width:80%", |
|
32 |
+ verbatimTextOutput(ns("filepath"))) |
|
33 |
+ ), |
|
34 |
+ column(6, |
|
35 |
+ p(class = "results", "File output:"), |
|
36 |
+ div(style = "width:80%", |
|
37 |
+ verbatimTextOutput(ns("outResult"))) |
|
38 |
+ ), |
|
39 |
+ br(), br(), br(), br(), br() |
|
40 |
+ ), |
|
41 |
+ |
|
42 |
+ # file operations ------------------------------ |
|
43 |
+ fluidRow( |
|
44 |
+ br(), |
|
45 |
+ # esta funcion permite enviar mensajes |
|
46 |
+ column(6, class = "left", |
|
47 |
+ h3(class = "blackTag", |
|
48 |
+ "File operations") |
|
49 |
+ ), |
|
50 |
+ column(3, class = "right"), |
|
51 |
+ br(), br(), br(), br(), br() |
|
52 |
+ ), |
|
53 |
+ |
|
54 |
+ # Outputs right --------------------------------------------- |
|
55 |
+ fluidRow( |
|
56 |
+ |
|
57 |
+ column(6, |
|
58 |
+ p(class = "results", "N filter output:"), |
|
59 |
+ div(style = "width:80%", |
|
60 |
+ verbatimTextOutput(ns("N"))), |
|
61 |
+ p(class = "results", "Low complexity filter output:"), |
|
62 |
+ div(style = "width:80%", |
|
63 |
+ verbatimTextOutput(ns("lowComplexFilter"))), |
|
64 |
+ p(class = "results", "Adapter filter output:"), |
|
65 |
+ div(style = "width:80%", |
|
66 |
+ verbatimTextOutput(ns("adaptFilter"))), |
|
67 |
+ p(class = "results", "Average quality filter output:"), |
|
68 |
+ div(style = "width:80%", |
|
69 |
+ verbatimTextOutput(ns("meanQFilter"))) |
|
70 |
+ ), |
|
71 |
+ |
|
72 |
+ # outputs left -------------------------------------------------- |
|
73 |
+ column(6, |
|
74 |
+ p(class = "results", "Low quality 3' tails filter output:"), |
|
75 |
+ div(style = "width:80%", |
|
76 |
+ verbatimTextOutput(ns("TrimQual"))), |
|
77 |
+ p(class = "results", "Fixed-length tails trim output:"), |
|
78 |
+ div(style = "width:80%", |
|
79 |
+ verbatimTextOutput(ns("trimTails"))), |
|
80 |
+ p(class = "results", "Length filter output:"), |
|
81 |
+ div(style = "width:80%", |
|
82 |
+ verbatimTextOutput(ns("sizeFilter"))), |
|
83 |
+ p(class = "results", "Duplicated filter output:"), |
|
84 |
+ div(style = "width:80%", |
|
85 |
+ verbatimTextOutput(ns("DuplicFilter"))) |
|
86 |
+ ) |
|
87 |
+ |
|
88 |
+ ) # end fluidRow |
|
89 |
+ |
|
90 |
+ ) # end mainpanel |
|
91 |
+ ) # end sidebarLayout |
|
92 |
+ ) # end tabpanel |
|
93 |
+} |