Browse code

fix license issue

Nick authored on 05/10/2022 05:29:56
Showing 3 changed files

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@@ -1,2 +1,3 @@
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 ^FuseSOM\.Rproj$
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 ^\.Rproj\.user$
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+^LICENSE\.md$
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@@ -7,7 +7,7 @@ Description: A correlation based multiview self organizing map for the character
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     is a tool for unsupervised clustering. `FuseSOM` is robust and achieves high accuracy by 
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     combining a `Self Organizing Map` architecture and a `Multiview` integration of 
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     correlation based metrics to cluster highly multiplexed in situ imaging cytometry assays.
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-License: GPL (>=2)
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+License: GPL (>= 2)
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 Encoding: UTF-8
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 Roxygen: list(markdown = TRUE)
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 RoxygenNote: 7.2.1
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new file mode 100644
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@@ -0,0 +1,336 @@
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+GNU General Public License
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+==========================
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+
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+_Version 2, June 1991_  
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+_Copyright © 1989, 1991 Free Software Foundation, Inc.,_  
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+_51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA_
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+
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+Everyone is permitted to copy and distribute verbatim copies
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+of this license document, but changing it is not allowed.
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+
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+### Preamble
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+
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+The licenses for most software are designed to take away your
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+freedom to share and change it.  By contrast, the GNU General Public
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+License is intended to guarantee your freedom to share and change free
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+software--to make sure the software is free for all its users.  This
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+General Public License applies to most of the Free Software
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+Foundation's software and to any other program whose authors commit to
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+using it.  (Some other Free Software Foundation software is covered by
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+the GNU Lesser General Public License instead.)  You can apply it to
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+your programs, too.
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+
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+When we speak of free software, we are referring to freedom, not
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+price.  Our General Public Licenses are designed to make sure that you
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+have the freedom to distribute copies of free software (and charge for
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+this service if you wish), that you receive source code or can get it
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+if you want it, that you can change the software or use pieces of it
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+in new free programs; and that you know you can do these things.
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+
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+To protect your rights, we need to make restrictions that forbid
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+anyone to deny you these rights or to ask you to surrender the rights.
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+These restrictions translate to certain responsibilities for you if you
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+distribute copies of the software, or if you modify it.
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+
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+For example, if you distribute copies of such a program, whether
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+gratis or for a fee, you must give the recipients all the rights that
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+you have.  You must make sure that they, too, receive or can get the
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+source code.  And you must show them these terms so they know their
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+rights.
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+
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+We protect your rights with two steps: **(1)** copyright the software, and
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+**(2)** offer you this license which gives you legal permission to copy,
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+distribute and/or modify the software.
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+
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+Also, for each author's protection and ours, we want to make certain
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+that everyone understands that there is no warranty for this free
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+software.  If the software is modified by someone else and passed on, we
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+want its recipients to know that what they have is not the original, so
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+Finally, any free program is threatened constantly by software
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+
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+The precise terms and conditions for copying, distribution and
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+modification follow.
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+
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+### TERMS AND CONDITIONS FOR COPYING, DISTRIBUTION AND MODIFICATION
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+
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+**0.** This License applies to any program or other work which contains
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+a notice placed by the copyright holder saying it may be distributed
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+
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+Activities other than copying, distribution and modification are not
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+**1.** You may copy and distribute verbatim copies of the Program's
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+source code as you receive it, in any medium, provided that you
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+copyright notice and disclaimer of warranty; keep intact all the
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+These requirements apply to the modified work as a whole.  If
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+
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+**3.** You may copy and distribute the Program (or a work based on it,
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+* **c)** Accompany it with the information you received as to the offer
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+The source code for a work means the preferred form of the work for
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+distribution of the source code, even though third parties are not
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+compelled to copy the source along with the object code.
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+
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+**4.** You may not copy, modify, sublicense, or distribute the Program
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+except as expressly provided under this License.  Any attempt
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+otherwise to copy, modify, sublicense or distribute the Program is
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+void, and will automatically terminate your rights under this License.
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+However, parties who have received copies, or rights, from you under
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+this License will not have their licenses terminated so long as such
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+
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+**5.** You are not required to accept this License, since you have not
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+Program), you indicate your acceptance of this License to do so, and
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+the Program or works based on it.
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+
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+**6.** Each time you redistribute the Program (or any work based on the
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+these terms and conditions.  You may not impose any further
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+restrictions on the recipients' exercise of the rights granted herein.
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+You are not responsible for enforcing compliance by third parties to
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+this License.
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+
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+**7.** If, as a consequence of a court judgment or allegation of patent
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+infringement or for any other reason (not limited to patent issues),
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+conditions are imposed on you (whether by court order, agreement or
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+otherwise) that contradict the conditions of this License, they do not
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+excuse you from the conditions of this License.  If you cannot
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+distribute so as to satisfy simultaneously your obligations under this
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+License and any other pertinent obligations, then as a consequence you
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+may not distribute the Program at all.  For example, if a patent
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+license would not permit royalty-free redistribution of the Program by
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+all those who receive copies directly or indirectly through you, then
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+the only way you could satisfy both it and this License would be to
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+refrain entirely from distribution of the Program.
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+
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+If any portion of this section is held invalid or unenforceable under
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+any particular circumstance, the balance of the section is intended to
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+apply and the section as a whole is intended to apply in other
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+circumstances.
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+
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+It is not the purpose of this section to induce you to infringe any
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+patents or other property right claims or to contest validity of any
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+such claims; this section has the sole purpose of protecting the
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+system; it is up to the author/donor to decide if he or she is willing
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+to distribute software through any other system and a licensee cannot
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+impose that choice.
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+
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+This section is intended to make thoroughly clear what is believed to
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+be a consequence of the rest of this License.
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+
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+**8.** If the distribution and/or use of the Program is restricted in
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+certain countries either by patents or by copyrighted interfaces, the
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+original copyright holder who places the Program under this License
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+may add an explicit geographical distribution limitation excluding
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+those countries, so that distribution is permitted only in or among
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+countries not thus excluded.  In such case, this License incorporates
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+the limitation as if written in the body of this License.
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+
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+**9.** The Free Software Foundation may publish revised and/or new versions
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+of the General Public License from time to time.  Such new versions will
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+be similar in spirit to the present version, but may differ in detail to
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+address new problems or concerns.
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+
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+Each version is given a distinguishing version number.  If the Program
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+specifies a version number of this License which applies to it and “any
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+later version”, you have the option of following the terms and conditions
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+either of that version or of any later version published by the Free
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+Software Foundation.  If the Program does not specify a version number of
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+this License, you may choose any version ever published by the Free Software
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+Foundation.
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+
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+**10.** If you wish to incorporate parts of the Program into other free
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+programs whose distribution conditions are different, write to the author
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+to ask for permission.  For software which is copyrighted by the Free
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+Software Foundation, write to the Free Software Foundation; we sometimes
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+make exceptions for this.  Our decision will be guided by the two goals
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+of preserving the free status of all derivatives of our free software and
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+of promoting the sharing and reuse of software generally.
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+
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+### NO WARRANTY
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+
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+**11.** BECAUSE THE PROGRAM IS LICENSED FREE OF CHARGE, THERE IS NO WARRANTY
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+FOR THE PROGRAM, TO THE EXTENT PERMITTED BY APPLICABLE LAW.  EXCEPT WHEN
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+OTHERWISE STATED IN WRITING THE COPYRIGHT HOLDERS AND/OR OTHER PARTIES
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+PROVIDE THE PROGRAM “AS IS” WITHOUT WARRANTY OF ANY KIND, EITHER EXPRESSED
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+OR IMPLIED, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
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+MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE.  THE ENTIRE RISK AS
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+TO THE QUALITY AND PERFORMANCE OF THE PROGRAM IS WITH YOU.  SHOULD THE
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+PROGRAM PROVE DEFECTIVE, YOU ASSUME THE COST OF ALL NECESSARY SERVICING,
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+REPAIR OR CORRECTION.
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+
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+**12.** IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING
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+WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MAY MODIFY AND/OR
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+REDISTRIBUTE THE PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES,
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+INCLUDING ANY GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING
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+TO LOSS OF DATA OR DATA BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY
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+YOU OR THIRD PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER
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+PROGRAMS), EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE
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+POSSIBILITY OF SUCH DAMAGES.
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+
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+END OF TERMS AND CONDITIONS
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+
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+### How to Apply These Terms to Your New Programs
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+
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+If you develop a new program, and you want it to be of the greatest
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+possible use to the public, the best way to achieve this is to make it
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+free software which everyone can redistribute and change under these terms.
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+
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+To do so, attach the following notices to the program.  It is safest
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+to attach them to the start of each source file to most effectively
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+convey the exclusion of warranty; and each file should have at least
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+the “copyright” line and a pointer to where the full notice is found.
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+
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+    <one line to give the program's name and a brief idea of what it does.>
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+    Copyright (C) <year>  <name of author>
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+    
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+    This program is free software; you can redistribute it and/or modify
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+    it under the terms of the GNU General Public License as published by
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+    the Free Software Foundation; either version 2 of the License, or
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+    (at your option) any later version.
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+    
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+    This program is distributed in the hope that it will be useful,
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+    but WITHOUT ANY WARRANTY; without even the implied warranty of
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+    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
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+    GNU General Public License for more details.
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+    
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+    You should have received a copy of the GNU General Public License along
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+    with this program; if not, write to the Free Software Foundation, Inc.,
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+    51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
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+
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+Also add information on how to contact you by electronic and paper mail.
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+
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+If the program is interactive, make it output a short notice like this
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+when it starts in an interactive mode:
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+
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+    Gnomovision version 69, Copyright (C) year name of author
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+    Gnomovision comes with ABSOLUTELY NO WARRANTY; for details type `show w'.
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+    This is free software, and you are welcome to redistribute it
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+    under certain conditions; type `show c' for details.
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+
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+The hypothetical commands `show w` and `show c` should show the appropriate
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+parts of the General Public License.  Of course, the commands you use may
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+be called something other than `show w` and `show c`; they could even be
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+mouse-clicks or menu items--whatever suits your program.
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+
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+You should also get your employer (if you work as a programmer) or your
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+school, if any, to sign a “copyright disclaimer” for the program, if
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+necessary.  Here is a sample; alter the names:
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+
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+    Yoyodyne, Inc., hereby disclaims all copyright interest in the program
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+    `Gnomovision' (which makes passes at compilers) written by James Hacker.
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+    
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+    <signature of Ty Coon>, 1 April 1989
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+    Ty Coon, President of Vice
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+
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+This General Public License does not permit incorporating your program into
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+proprietary programs.  If your program is a subroutine library, you may
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+consider it more useful to permit linking proprietary applications with the
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+library.  If this is what you want to do, use the GNU Lesser General
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+Public License instead of this License.