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# Generated by roxygen2: do not edit by hand
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| dfe03f19 |
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| 1d874ee0 |
export("geneSets<-")
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export("gsvaAnnotation<-")
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export(computeGeneSetsOverlap)
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export(deduplicateGeneSets)
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export(filterGeneSets)
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export(geneIdsToGeneSetCollection)
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export(geneSetSizes)
export(geneSets)
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export(gsva)
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export(gsvaAnnotation)
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export(gsvaEnrichment)
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export(gsvaParam)
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export(gsvaRanks)
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export(gsvaScores)
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export(guessGeneIdType)
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export(igsva)
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export(plageParam)
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export(readGMT)
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export(spatCor)
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export(ssgseaParam)
export(zscoreParam)
exportClasses(GsvaExprData)
exportClasses(GsvaGeneSets)
exportClasses(GsvaMethodParam)
exportClasses(gsvaParam)
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exportClasses(gsvaRanksParam)
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exportClasses(plageParam)
exportClasses(ssgseaParam)
exportClasses(zscoreParam)
exportMethods(computeGeneSetsOverlap)
exportMethods(filterGeneSets)
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exportMethods(geneSetSizes)
exportMethods(geneSets)
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exportMethods(gsva)
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exportMethods(gsvaAnnotation)
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exportMethods(gsvaRanks)
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exportMethods(gsvaScores)
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exportMethods(spatCor)
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| 7dd65960 |
import(methods)
importClassesFrom(Biobase,ExpressionSet)
importClassesFrom(DelayedArray,DelayedArray)
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importClassesFrom(GSEABase,GeneIdentifierType)
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importClassesFrom(GSEABase,GeneSet)
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importClassesFrom(GSEABase,GeneSetCollection)
importClassesFrom(HDF5Array,HDF5Array)
importClassesFrom(Matrix,dgCMatrix)
importClassesFrom(SingleCellExperiment,SingleCellExperiment)
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importClassesFrom(SpatialExperiment,SpatialExperiment)
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importClassesFrom(SummarizedExperiment,SummarizedExperiment)
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importFrom(Biobase,selectSome)
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importFrom(BiocParallel,MulticoreParam)
importFrom(BiocParallel,SerialParam)
importFrom(BiocParallel,bpnworkers)
importFrom(BiocParallel,multicoreWorkers)
importFrom(BiocSingular,runRandomSVD)
importFrom(DelayedArray,close)
importFrom(DelayedArray,colAutoGrid)
importFrom(DelayedArray,colSums)
importFrom(DelayedArray,currentBlockId)
importFrom(DelayedArray,defaultAutoGrid)
importFrom(DelayedArray,gridReduce)
importFrom(DelayedArray,read_block)
importFrom(DelayedArray,rowAutoGrid)
importFrom(DelayedArray,t)
importFrom(DelayedArray,write_block)
importFrom(GSEABase,AnnoOrEntrezIdentifier)
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importFrom(GSEABase,ENSEMBLIdentifier)
importFrom(GSEABase,EntrezIdentifier)
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importFrom(GSEABase,NullCollection)
importFrom(GSEABase,NullIdentifier)
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importFrom(GSEABase,SymbolIdentifier)
importFrom(GSEABase,geneIdType)
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importFrom(GSEABase,mapIdentifiers)
importFrom(HDF5Array,HDF5RealizationSink)
importFrom(HDF5Array,writeHDF5Array)
importFrom(IRanges,CharacterList)
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importFrom(IRanges,IntegerList)
importFrom(IRanges,match)
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importFrom(Matrix,colSums)
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importFrom(Matrix,nnzero)
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importFrom(S4Vectors,DataFrame)
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importFrom(S4Vectors,SimpleList)
importFrom(SingleCellExperiment,SingleCellExperiment)
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importFrom(SpatialExperiment,SpatialExperiment)
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importFrom(SummarizedExperiment,SummarizedExperiment)
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importFrom(SummarizedExperiment,assay)
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importFrom(cli,cli_abort)
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importFrom(cli,cli_alert_danger)
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importFrom(cli,cli_alert_info)
importFrom(cli,cli_alert_success)
importFrom(cli,cli_alert_warning)
importFrom(cli,cli_progress_bar)
importFrom(cli,cli_progress_done)
importFrom(cli,cli_progress_update)
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importFrom(graphics,abline)
importFrom(graphics,grid)
importFrom(graphics,lines)
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importFrom(graphics,plot)
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importFrom(graphics,segments)
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| 7dd65960 |
importFrom(methods,new)
importFrom(parallel,splitIndices)
importFrom(sparseMatrixStats,colRanks)
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importFrom(sparseMatrixStats,rowRanges)
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importFrom(stats,dist)
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importFrom(stats,ecdf)
importFrom(stats,na.omit)
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importFrom(stats,pnorm)
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importFrom(stats,rnorm)
importFrom(stats,rpois)
importFrom(stats,sd)
importFrom(utils,capture.output)
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importFrom(utils,globalVariables)
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importFrom(utils,head)
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importFrom(utils,installed.packages)
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importFrom(utils,packageDescription)
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importFrom(utils,read.csv)
importFrom(utils,setTxtProgressBar)
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importFrom(utils,tail)
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importFrom(utils,txtProgressBar)
importFrom(utils,write.csv)
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importMethodsFrom(Biobase,"annotation<-")
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importMethodsFrom(Biobase,annotation)
importMethodsFrom(Biobase,experimentData)
importMethodsFrom(Biobase,exprs)
importMethodsFrom(Biobase,featureNames)
importMethodsFrom(Biobase,phenoData)
importMethodsFrom(BiocParallel,"bpprogressbar<-")
importMethodsFrom(BiocParallel,"bpworkers<-")
importMethodsFrom(BiocParallel,bpiterate)
importMethodsFrom(BiocParallel,bplapply)
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importMethodsFrom(GSEABase,GeneSet)
importMethodsFrom(GSEABase,GeneSetCollection)
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importMethodsFrom(GSEABase,geneIds)
importMethodsFrom(GSEABase,incidence)
importMethodsFrom(IRanges,match)
importMethodsFrom(S4Vectors,"metadata<-")
importMethodsFrom(S4Vectors,metadata)
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importMethodsFrom(SpatialExperiment,imgData)
importMethodsFrom(SpatialExperiment,spatialCoords)
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importMethodsFrom(SummarizedExperiment,assayNames)
importMethodsFrom(SummarizedExperiment,assays)
importMethodsFrom(SummarizedExperiment,colData)
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importMethodsFrom(SummarizedExperiment,rowData)
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useDynLib(GSVA, .registration=TRUE)
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