Name Mode Size
..
GeneNetworkBuilder-package.Rd 100644 1 kb
browseNetwork-shiny.Rd 100644 1 kb
browseNetwork.Rd 100644 1 kb
buildNetwork.Rd 100644 1 kb
ce.IDsMap.Rd 100644 1 kb
ce.interactionmap.Rd 100644 1 kb
ce.mapIDs.Rd 100644 1 kb
ce.miRNA.map.Rd 100644 0 kb
convertID.Rd 100644 1 kb
cy3Network.Rd 100644 1 kb
example.data.Rd 100644 1 kb
exportNetwork.Rd 100644 1 kb
filterNetwork.Rd 100644 2 kb
hs.IDsMap.Rd 100644 1 kb
hs.interactionmap.Rd 100644 1 kb
hs.mapIDs.Rd 100644 1 kb
hs.miRNA.map.Rd 100644 0 kb
networkFromGenes.Rd 100644 1 kb
polishNetwork.Rd 100644 2 kb
saveXGMML.Rd 100644 0 kb
subsetNetwork.Rd 100644 1 kb
uniqueExprsData.Rd 100644 1 kb
README.md
# GeneNetworkBuilder [![platforms](http://bioconductor.org/shields/availability/devel/GeneNetworkBuilder.svg)](http://bioconductor.org/packages/devel/bioc/html/GeneNetworkBuilder.html) [![build](http://bioconductor.org/shields/build/devel/bioc/GeneNetworkBuilder.svg)](http://bioconductor.org/packages/devel/bioc/html/GeneNetworkBuilder.html) Build Regulatory Network from ChIP-chip/ChIP-seq and Expression Data Appliation for discovering direct or indirect targets of transcription factors using ChIP-chip or ChIP-seq, and microarray or RNA-seq gene expression data. Inputting a list of genes of potential targets of one TF from ChIP-chip or ChIP-seq, and the gene expression results, GeneNetworkBuilder generates a regulatory network of the TF. ## Installation To install this package, start R and enter: ```r library(BiocManager) BiocManager::install("GeneNetworkBuilder") ``` ## Documentation To view documentation of GeneNetworkBuilder, start R and enter: ```r browseVignettes("GeneNetworkBuilder") ```