<!-- README.md is generated from README.Rmd. Please edit that file --> # HicAggR <a href='https://cuvierlab.github.io/HicAggR/'><img src='man/figures/logo.png' align="right" /></a> <!-- badges: start --> [](https://github.com/CuvierLab/HicAggR/actions/workflows/R-CMD-check.yaml) [](https://app.codecov.io/gh/CuvierLab/HicAggR?branch=master) <!-- badges: end --> This package provides a set of functions useful in the analysis of 3D genomic interactions. It includes the import of standard HiC data formats into R and HiC normalisation procedures. The main objective of this package is to improve the visualization and quantification of the analysis of HiC contacts through aggregation. <img src='man/figures/pkgPresentation.png' /> ## Installation Development version is avalaible from [GitHub](https://github.com/CuvierLab/HicAggR): ``` r remotes::install_github("CuvierLab/HicAggR") ``` ## Documentation [HicAggR](https://cuvierlab.github.io/HicAggR/)