Name Mode Size
..
KEGGEdge-class.Rd 100644 2 kb
KEGGEdgeSubType-class.Rd 100644 1 kb
KEGGEdgeSubtype.Rd 100644 0 kb
KEGGEdgeType.Rd 100644 0 kb
KEGGGraphics-class.Rd 100644 1 kb
KEGGGroup-class.Rd 100644 1 kb
KEGGNode-class.Rd 100644 3 kb
KEGGNodeType.Rd 100644 0 kb
KEGGPATHID2NAME.Rd 100644 0 kb
KEGGPathway-class.Rd 100644 3 kb
KEGGPathwayInfo-class.Rd 100644 1 kb
KEGGReaction-class.Rd 100644 2 kb
KEGGpathway2Graph.Rd 100644 1 kb
KEGGpathway2reactionGraph.Rd 100644 2 kb
expandKEGGNode.Rd 100644 0 kb
expandKEGGPathway.Rd 100644 1 kb
getDisplayName-methods.Rd 100644 1 kb
getEntryID-methods.Rd 100644 1 kb
getKEGGID-methods.Rd 100644 1 kb
getKEGGgeneLink-methods.Rd 100644 0 kb
getKEGGnodeData.Rd 100644 2 kb
getKGMLurl.Rd 100644 3 kb
getName-methods.Rd 100644 1 kb
getNamedElement.Rd 100644 1 kb
getPathwayInfo-methods.Rd 100644 1 kb
getReactions-methods.Rd 100644 1 kb
getRgraphvizEdgeNames.Rd 100644 1 kb
getSubtype-methods.Rd 100644 1 kb
getTitle-methods.Rd 100644 1 kb
getType-methods.Rd 100644 1 kb
getValue-methods.Rd 100644 0 kb
graphDensity.Rd 100644 1 kb
isHomoList.Rd 100644 1 kb
kgmlFileName2PathwayName.Rd 100644 1 kb
mergeGraphs.Rd 100644 1 kb
mergeKEGGgraphs.Rd 100644 2 kb
neighborhood.Rd 100644 2 kb
parseEntry.Rd 100644 1 kb
parseGraphics.Rd 100644 1 kb
parseKGML.Rd 100644 1 kb
parseKGML2DataFrame.Rd 100644 2 kb
parseKGML2Graph.Rd 100644 1 kb
parseKGMLexpandMaps.Rd 100644 2 kb
parsePathwayInfo.Rd 100644 1 kb
parseReaction.Rd 100644 1 kb
parseRelation.Rd 100644 1 kb
parseSubType.Rd 100644 1 kb
plotKEGGgraph.Rd 100644 2 kb
pvalue2asterisk.Rd 100644 1 kb
queryKEGGsubgraph.Rd 100644 2 kb
randomSubGraph.Rd 100644 1 kb
splitKEGGgroup.Rd 100644 1 kb
subGraphByNodeType.Rd 100644 1 kb
subKEGGgraph.Rd 100644 2 kb
subtypeDisplay-methods.Rd 100644 1 kb
top.Rd 100644 1 kb
translateKEGGID2GeneID.Rd 100644 2 kb
translateKEGGgraph.Rd 100644 1 kb
README.md
KEGGgraph: A Graph Approach to KEGG PATHWAY in R and Bioconductor === `KEGGgraph` is a R/Biocoductor package to parse KEGG PATHWAYS in graph objects. ## Install Install `KEGGgraph` using `BiocManager`, the R package that manages Bioconductor packages. ```R library(BiocManager) BiocManager::install("KEGGgraph") ``` ## Usage Please see [the vignettes](http://bioconductor.org/packages/release/bioc/html/KEGGgraph.html) as well as help files for examples. ## Questions, suggestions, comments? Please do not hesitate emailing me, or post on [https://support.bioconductor.org/](https://support.bioconductor.org/) ## Citation Zhang, Jitao David, and Stefan Wiemann. “KEGGgraph: A Graph Approach to KEGG PATHWAY in R and Bioconductor.” Bioinformatics 25, no. 11 (June 1, 2009): 1470–71. https://doi.org/10.1093/bioinformatics/btp167. ## External links * [KEGGgraph Bioconductor page](http://bioconductor.org/packages/release/bioc/html/KEGGgraph.html) * [KEGG: Kyoto Encyclopedia of Genes and Genomes](https://www.genome.jp/kegg/)