| e9051ba8 | # Generated by roxygen2: do not edit by hand export(buildRestrictedUniverse) export(checkUniverseAppropriateness) export(extractEnrichmentOverlaps) export(getRegionFile) export(getRegionSet) export(listRegionSets) export(loadRegionDB) export(mergeRegionDBs) export(plotTopLOLAEnrichments) export(readBed) export(readCollection) export(readCollectionAnnotation) export(readCollectionFiles) export(readRegionGRL) export(readRegionSetAnnotation) export(redefineUserSets) export(runLOLA) export(setSharedDataDir) export(splitFileIntoCollection) export(writeCombinedEnrichment) import(BiocGenerics) import(IRanges) import(S4Vectors) |
| 9f57a6bc | import(methods) |
| e9051ba8 | importFrom(GenomicRanges,GRanges) importFrom(GenomicRanges,GRangesList) importFrom(GenomicRanges,elementMetadata) importFrom(GenomicRanges,strand) |
| df9aa6b0 | importFrom(data.table,":=") importFrom(data.table,as.data.table) importFrom(data.table,data.table) importFrom(data.table,fread) importFrom(data.table,setDT) importFrom(data.table,setcolorder) importFrom(data.table,setkey) importFrom(data.table,setkeyv) importFrom(data.table,setnames) |
| f9a2ac4a | importFrom(reshape2,melt) |
| e9051ba8 | importFrom(stats,fisher.test) importFrom(stats,setNames) importFrom(utils,write.table) |