man/RQO-methods.Rd
0872fb02
 % Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/DistStatis-Class.R
 \docType{methods}
 \name{RQO}
 \alias{RQO}
 \alias{RQO,DistStatis-method}
 \title{RQO}
 \usage{
 \S4method{RQO}{DistStatis}(x)
 }
 \arguments{
 \item{x}{an object from DistSatis class.}
 }
 \value{
 RQO Representation Quality of the observations in the compromise configuration from LinkData object
 }
 \description{
 Accessor to RQO (% of individuals representation) from LinkData output.
 }
 \examples{
 {
 data(Taraoceans)
 pro.phylo <- Taraoceans$taxonomy[ ,'Phylum']
 TaraOc<-list(Taraoceans$phychem,as.data.frame(Taraoceans$pro.phylo)
 ,as.data.frame(Taraoceans$pro.NOGs))
 TaraOc_1<-scale(TaraOc[[1]])
 Normalization<-lapply(list(TaraOc[[2]],TaraOc[[3]]),
 function(x){DataProcessing(x,Method='Compositional')})
 colnames(Normalization[[1]])=pro.phylo
 colnames(Normalization[[2]])=Taraoceans$GO
 TaraOc<-list(TaraOc_1,Normalization[[1]],Normalization[[2]])
 names(TaraOc)<-c('phychem','pro_phylo','pro_NOGs')
 TaraOc<-lapply(TaraOc,as.data.frame)
 Output<-LinkData(TaraOc,Scale =FALSE,Distance = c('ScalarProduct','Euclidean','Euclidean'))
 RQO(Output)
 }
 }