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+% Generated by roxygen2: do not edit by hand |
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+% Please edit documentation in R/DistStatis-Class.R |
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+\docType{methods} |
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+\name{Inertia_comp} |
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+\alias{Inertia_comp} |
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+\alias{Inertia_comp,DistStatis-method} |
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+\title{Inertia_comp} |
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+\usage{ |
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+\S4method{Inertia_comp}{DistStatis}(x) |
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+} |
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+\arguments{ |
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+\item{x}{an object from DistSatis class.} |
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+} |
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+\value{ |
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+Inertia_comp explained inertia for Compromise matrix from LinkData object |
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+} |
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+\description{ |
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+Accessor to explained inertia of compromise axis from LinkData output. |
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+} |
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+\examples{ |
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+{ |
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+data(Taraoceans) |
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+pro.phylo <- Taraoceans$taxonomy[ ,'Phylum'] |
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+TaraOc<-list(Taraoceans$phychem,as.data.frame(Taraoceans$pro.phylo) |
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+,as.data.frame(Taraoceans$pro.NOGs)) |
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+TaraOc_1<-scale(TaraOc[[1]]) |
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+Normalization<-lapply(list(TaraOc[[2]],TaraOc[[3]]), |
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+function(x){DataProcessing(x,Method='Compositional')}) |
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+colnames(Normalization[[1]])=pro.phylo |
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+colnames(Normalization[[2]])=Taraoceans$GO |
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+TaraOc<-list(TaraOc_1,Normalization[[1]],Normalization[[2]]) |
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+names(TaraOc)<-c('phychem','pro_phylo','pro_NOGs') |
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+TaraOc<-lapply(TaraOc,as.data.frame) |
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+Output<-LinkData(TaraOc,Scale =FALSE,Distance = c('ScalarProduct','Euclidean','Euclidean')) |
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+Inertia_comp(Output) |
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+} |
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+} |