man/annotateBiotransf.Rd
6c5563f7
 \name{annotateBiotransf}
 \alias{annotateBiotransf}
 \title{Single Biotransformation Annotator}
 \description{
 Function \code{annotateBiotransf} annotates a spectrum with an already detected Biotransformation.
 }
 \usage{
 
 annotateBiotransf(biotransf, diffIndex, spectrum, sigPeaksTable,biotransformationsTable)
 
 }
 
 \arguments{
 	  \item{biotransf}{
 The already detected biotransformation using the \code{\link{inBetween}} function
 }
   \item{diffIndex}{
 A numeric pointer to the other peak involved in the biotransformation inside the spectrum.
 }
   \item{spectrum}{
 The spectrum to be annotated.
 }
   \item{sigPeaksTable}{
 A dataframe obtained from running the \code{\link{sigPeaksTable}} function.
 }
   \item{biotransformationsTable}{
 Table of biotransformations either read from the bioTable argument or the default MAIT table.
 }
 
 }
 \value{
 A vector containg the masses of the peaks involved in the biotransformation, their retention time, their annotation and their indices in the signPeaksTable.
 }
 \seealso{
   \code{\link{Biotransformations}}}
 
 \author{Francesc Fernandez,
  \email{[email protected]}}
 
 \keyword{internal}