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#' @importFrom BiocParallel SnowParam MulticoreParam
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| 5552e7d6 |
#'
getBPPARAM <- function(threads) {
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| aa875ce8 |
bp <- NULL
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| 4978bdfa |
if ( getOS() == 'Windows' ) {
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| aa875ce8 |
bp <- SnowParam(workers=threads, type='SOCK')
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| 4978bdfa |
} else {
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| aa875ce8 |
bp <- MulticoreParam(workers=threads)
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| 4978bdfa |
}
return(bp)
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| 5552e7d6 |
}
getOS <- function() {
|
| aa875ce8 |
os <- toupper(.Platform$OS.type)
sysinf <- Sys.info()
|
| 5552e7d6 |
if ( !is.null(sysinf) ) {
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| aa875ce8 |
os <- sysinf['sysname']
|
| 5552e7d6 |
if ( os == 'Darwin' ) {
|
| aa875ce8 |
os <- "OSX"
|
| 5552e7d6 |
} else if ( os == 'Linux' ) {
|
| aa875ce8 |
os <- "LINUX"
|
| 5552e7d6 |
} else {
|
| aa875ce8 |
os <- "WINDOWS"
|
| 5552e7d6 |
}
} else {
if ( grepl("^darwin", R.version$os, perl=TRUE) ) {
|
| aa875ce8 |
os <- "OSX"
|
| 5552e7d6 |
} else if ( grepl("linux-gnu", R.version$os, perl=TRUE) ) {
|
| aa875ce8 |
os <- "LINUX"
|
| 5552e7d6 |
} else {
|
| aa875ce8 |
os <- "WINDOWS"
|
| 5552e7d6 |
}
}
return(os)
}
getNodeEdge <- function(fpth) {
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| aa875ce8 |
. <- entity <- type <- from <- to <- title <- NULL
|
| 5552e7d6 |
|
| 937bb002 |
wordslist <- readLines(fpth) |> strsplit("\t")
|
| 5552e7d6 |
|
| aa875ce8 |
nodedt <- lapply(wordslist, function(words) {
|
| 937bb002 |
if (length(words) == 2) as.list(words)
}) |> rbindlist() |> setnames( c('type', 'entity') ) |>
_[, .(entity, type)]
|
| 5552e7d6 |
|
| aa875ce8 |
edgedt <- lapply(wordslist, function(words) {
|
| 937bb002 |
if (length(words) == 3) as.list(words)
}) |> rbindlist() |> setnames( c('from', 'to', 'title') ) |>
_[, .(from, to, title)]
|
| 5552e7d6 |
|
| 937bb002 |
list(nodedt=nodedt, edgedt=edgedt)
|
| 5552e7d6 |
}
|
