# Generated by roxygen2: do not edit by hand

export(IntersectionNotStrict)
export(backgroundCorrection)
export(butterFilter)
export(callPeaks)
export(cumulativePercentage)
export(exportSignals)
export(getCorrelations)
export(groupZscores)
export(log2se)
export(peakdet)
export(plotSig)
export(smoothRatiosByChromosome)
export(tileCount)
export(tileCount2)
export(transformData)
export(trimPeaks)
export(zscoreOverBck)
import(EmpiricalBrownsMethod)
import(GenomeInfoDb)
import(GenomicAlignments)
import(GenomicRanges)
import(Rsamtools)
import(S4Vectors)
import(SummarizedExperiment)
import(limma)
import(metap)
import(rtracklayer)
importFrom(ATACseqQC,readBamFile)
importFrom(BiocGenerics,table)
importFrom(BiocGenerics,which.min)
importFrom(IRanges,IRanges)
importFrom(IRanges,Views)
importFrom(IRanges,elementNROWS)
importFrom(IRanges,tile)
importFrom(IRanges,viewApply)
importFrom(IRanges,viewMeans)
importFrom(IRanges,viewSums)
importFrom(baseline,baseline)
importFrom(baseline,getCorrected)
importFrom(corrplot,corrplot)
importFrom(csaw,readParam)
importFrom(csaw,windowCounts)
importFrom(grDevices,colorRampPalette)
importFrom(grDevices,dev.off)
importFrom(grDevices,pdf)
importFrom(graphics,abline)
importFrom(graphics,axis)
importFrom(graphics,legend)
importFrom(graphics,matlines)
importFrom(graphics,par)
importFrom(graphics,plot)
importFrom(methods,as)
importFrom(methods,is)
importFrom(signal,butter)
importFrom(signal,filter)
importFrom(stats,as.formula)
importFrom(stats,cor.test)
importFrom(stats,loess)
importFrom(stats,loess.smooth)
importFrom(stats,median)
importFrom(stats,p.adjust)
importFrom(stats,pnorm)
importFrom(stats,predict)
importFrom(stats,quantile)
importFrom(stats,setNames)
importFrom(trackViewer,ideogramPlot)
importFrom(utils,combn)