# Generated by roxygen2: do not edit by hand
 

 export("exons<-")
 export("methy<-")

 export("mod_code<-")

 export("samples<-")

 export(ModBamFiles)
 export(ModBamResult)

 export(NanoMethResult)

 export(bsseq_to_edger)
 export(bsseq_to_log_methy_ratio)

 export(cluster_regions)

 export(create_tabix_file)

 export(exons)

 export(exons_to_genes)

 export(filter_methy)

 export(get_cgi_grcm39)

 export(get_cgi_hg19)
 export(get_cgi_hg38)
 export(get_cgi_mm10)

 export(get_example_exons_mus_musculus)

 export(get_exons_grcm39)

 export(get_exons_hg19)
 export(get_exons_hg38)

 export(get_exons_homo_sapiens)

 export(get_exons_mm10)

 export(get_exons_mus_musculus)

 export(load_example_modbamresult)

 export(load_example_nanomethresult)

 export(methy)

 export(methy_col_names)

 export(methy_to_bsseq)

 export(methy_to_edger)

 export(mod_code)

 export(modbam_to_tabix)

 export(plot_agg_genes)

 export(plot_agg_regions)

 export(plot_gene)

 export(plot_gene_heatmap)

 export(plot_grange)

 export(plot_grange_heatmap)

 export(plot_mds)
 export(plot_pca)

 export(plot_region)

 export(plot_region_heatmap)

 export(plot_violin)

 export(query_exons_gene_id)
 export(query_exons_region)
 export(query_exons_symbol)

 export(query_methy)

 export(region_methy_stats)

 export(samples)

 export(sigmoid)

 exportClasses(ModBamFiles)

 exportClasses(ModBamResult)

 exportClasses(NanoMethResult)

 exportMethods("exons<-")
 exportMethods("methy<-")

 exportMethods("mod_code<-")

 exportMethods("samples<-")

 exportMethods(exons)
 exportMethods(methy)

 exportMethods(mod_code)

 exportMethods(plot_gene)

 exportMethods(plot_gene_heatmap)

 exportMethods(plot_region)

 exportMethods(plot_region_heatmap)

 exportMethods(samples)

 exportMethods(show)

 import(Rcpp)

 import(assertthat)

 import(cpp11)

 import(dbscan)
 import(dplyr)

 import(fs)

 import(patchwork)

 import(tidyr)

 importFrom(BiocSingular,runPCA)

 importFrom(Biostrings,width)

 importFrom(IRanges,IRanges)

 importFrom(R.utils,gunzip)

 importFrom(Rsamtools,TabixFile)
 importFrom(Rsamtools,scanTabix)

 importFrom(S4Vectors,DataFrame)
 importFrom(SummarizedExperiment,colData)

 importFrom(assertthat,assert_that)

 importFrom(assertthat,is.dir)

 importFrom(assertthat,is.readable)

 importFrom(assertthat,is.string)

 importFrom(assertthat,is.writeable)

 importFrom(bsseq,BSseq)

 importFrom(dplyr,"%>%")

 importFrom(dplyr,arrange)

 importFrom(dplyr,case_when)

 importFrom(dplyr,distinct)

 importFrom(dplyr,filter)
 importFrom(dplyr,group_by)
 importFrom(dplyr,inner_join)
 importFrom(dplyr,mutate)
 importFrom(dplyr,n)

 importFrom(dplyr,rename)

 importFrom(dplyr,select)
 importFrom(dplyr,summarise)

 importFrom(dplyr,ungroup)

 importFrom(e1071,sigmoid)

 importFrom(forcats,fct_reorder)

 importFrom(ggplot2,aes)

 importFrom(ggplot2,draw_key_point)

 importFrom(ggplot2,geom_rect)
 importFrom(ggplot2,geom_segment)
 importFrom(ggplot2,geom_text)

 importFrom(ggplot2,geom_vline)

 importFrom(ggplot2,ggplot)
 importFrom(ggplot2,ggplot_build)
 importFrom(ggplot2,rel)
 importFrom(ggplot2,theme_void)
 importFrom(ggplot2,unit)
 importFrom(ggplot2,xlim)
 importFrom(ggplot2,ylim)

 importFrom(ggrastr,rasterise)

 importFrom(glue,glue)

 importFrom(graphics,hist)

 importFrom(limma,plotMDS)

 importFrom(methods,.valueClassTest)

 importFrom(methods,is)

 importFrom(methods,new)

 importFrom(purrr,map)

 importFrom(purrr,map_lgl)

 importFrom(readr,col_character)
 importFrom(readr,col_double)
 importFrom(readr,col_integer)
 importFrom(readr,col_logical)
 importFrom(readr,cols)

 importFrom(readr,local_edition)

 importFrom(readr,read_tsv)

 importFrom(rlang,.data)

 importFrom(scales,cut_si)
 importFrom(scales,label_number)

 importFrom(stats,approxfun)
 importFrom(stats,kmeans)

 importFrom(stats,median)

 importFrom(stats,prcomp)
 importFrom(stats,quantile)
 importFrom(stats,sd)

 importFrom(stats,setNames)

 importFrom(stringr,str_extract)

 importFrom(tibble,add_column)

 importFrom(tibble,as_tibble)

 importFrom(tibble,rownames_to_column)

 importFrom(tibble,tibble)
 importFrom(tidyr,unnest)

 importFrom(utils,installed.packages)

 importFrom(utils,packageVersion)

 importFrom(utils,read.delim)

 importFrom(utils,read.table)

 importFrom(withr,defer)

 useDynLib(NanoMethViz)