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@@ -1,9 +1,13 @@
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#' Plot aggregate regions
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#'
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#' @param x the NanoMethResult object.
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-#' @param regions a table of regions or GRanges, or a list of such objects. The table of regions must contain chr, start and end columns.
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-#' @param groups if 'features' is a list, a vector of characters of the same length as the list containing names for each member.
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+#' @param regions a table of regions or GRanges, or a list of such objects. The
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+#' table of regions must contain chr, start and end columns.
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+#' @param groups if 'features' is a list, a vector of characters of the same
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+#' length as the list containing names for each member.
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#' @param flank the number of flanking bases to add to each side of each region.
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+#' @param stranded TRUE if negative strand features should have coordinates
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+#' flipped to reflect features like transcription start sites.
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#' @param span the span for loess smoothing.
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#'
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#' @return a ggplot object.
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@@ -109,10 +113,7 @@ plot_agg_regions <- function(
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#' Plot aggregate regions with grouped samples
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#'
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-#' @param x the NanoMethResult object.
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-#' @param regions a table of regions or GRanges.
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-#' @param flank the number of flanking bases to add to each side of each region.
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-#' @param span the span for loess smoothing.
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+#' @inheritParams plot_agg_regions
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#'
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#' @return a ggplot plot object.
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#'
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