| e564ce6f |
# Generated by roxygen2: do not edit by hand
|
| ad7eccd4 |
export(Random_spongEffects)
export(build_classifier_central_genes)
export(calibrate_model)
export(define_modules)
export(enrichment_modules)
export(filter_ceRNA_network)
export(get_central_modules)
export(plot_accuracy_sensitivity_specificity)
export(plot_confusion_matrices)
export(plot_density_scores)
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| 0a8a62e7 |
export(plot_heatmaps)
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| ad7eccd4 |
export(plot_involved_miRNAs_to_modules)
export(plot_top_modules)
export(prepare_metabric_for_spongEffects)
export(prepare_tcga_for_spongEffects)
export(sample_zero_mscor_cov)
export(sample_zero_mscor_data)
export(sponge)
export(sponge_build_null_model)
export(sponge_compute_p_values)
export(sponge_edge_centralities)
export(sponge_gene_miRNA_interaction_filter)
export(sponge_network)
export(sponge_node_centralities)
export(sponge_plot_network)
export(sponge_plot_network_centralities)
export(sponge_plot_simulation_results)
export(sponge_run_benchmark)
export(sponge_subsampling)
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| fc27337e |
import(Biobase)
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| ec978d1a |
import(ComplexHeatmap)
import(MetBrewer)
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| fc27337e |
import(biomaRt)
import(caret)
import(cvms)
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| f46a082a |
import(doRNG)
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| fc27337e |
import(dplyr)
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| 98be15fa |
import(expm)
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| e564ce6f |
import(foreach)
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| ec978d1a |
import(ggplot2)
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| 92dbdf6c |
import(ggpubr)
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| fc27337e |
import(ggridges)
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| e564ce6f |
import(glmnet)
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| 4e55b551 |
import(grid)
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| b913270f |
import(iterators)
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| e564ce6f |
import(logging)
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| fc27337e |
import(randomForest)
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| eaac0c08 |
import(rlang)
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| 634049ec |
import(stringr)
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| 46186885 |
import(tidyr)
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| fc27337e |
import(tidyverse)
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| f47bde2e |
import(tnet)
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| 25b96ddc |
importFrom(Biobase,exprs)
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| 98be15fa |
importFrom(MASS,mvrnorm)
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| a2b1b0e8 |
importFrom(data.table,as.data.table)
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| 98be15fa |
importFrom(data.table,data.table)
importFrom(data.table,rbindlist)
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| 50dbef49 |
importFrom(data.table,setkey)
|
| bffe3090 |
importFrom(foreach,foreach)
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| 0a8a62e7 |
importFrom(gRbase,combn_prim)
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| 98be15fa |
importFrom(gRbase,cov2pcor)
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| e564ce6f |
importFrom(glmnet,cv.glmnet)
|
| b913270f |
importFrom(igraph,E)
importFrom(igraph,betweenness)
importFrom(igraph,degree)
importFrom(igraph,edge_betweenness)
importFrom(igraph,eigen_centrality)
importFrom(igraph,graph.data.frame)
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| e564ce6f |
importFrom(iterators,icount)
importFrom(iterators,iter)
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| b913270f |
importFrom(ppcor,pcor)
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| 50dbef49 |
importFrom(ppcor,pcor.test)
|
| e3265889 |
importFrom(stats,coef)
importFrom(stats,cor)
importFrom(stats,cov2cor)
importFrom(stats,df)
importFrom(stats,lm)
importFrom(stats,p.adjust)
importFrom(stats,pf)
importFrom(stats,predict)
importFrom(stats,reorder)
importFrom(stats,rnorm)
importFrom(stats,runif)
importFrom(stats,sd)
importFrom(stats,setNames)
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| 647aabef |
importFrom(stats,var)
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| e3265889 |
importFrom(stats,xtabs)
|
