import(methods)
 import(utils)
 
 importFrom(igraph, graph.data.frame, get.data.frame, layout.kamada.kawai,
                    plot.igraph, igraph.to.graphNEL)
 
 
 import(BiocGenerics)
 import(IRanges)
 import(GenomicRanges)

 importFrom(graph, nodeDataDefaults, nodeData,
                   edgeDataDefaults, edgeNames, edgeData)
 
 importFrom(Rgraphviz, agopen)

 import(GenomicFeatures)
 import(Rsamtools)
 

 exportClasses(.SplicingGraphGenes, SplicingGraphs)

 
 ### - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
 ### Export S4 methods for generics not defined in SplicingGraphs
 ###
 
 exportMethods(

     length,
     names,
     "[",
     "[[",
     elementLengths,
     unlist,

     intronsByTranscript,

     plot

 )
 
 
 ### - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

 ### Export non-generic functions (and non-function symbols)

 ###
 
 export(

     ## sgedges-methods.R:
     sgedges2,

 
     ## sgraph-methods.R:
     sgraph2,

     slideshow,

     ## bubbles-methods.R:
     ASCODE2DESC,
 

     ## countReads.R:
     assignSubfeatureHits,
 
     ## toy_data.R:
     toy_genes_gff,
     toy_reads_sam,
     toy_reads_bam,
     toy_overlaps,
     plotToyReads
 )
 
 
 ### - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
 ### Export S4 generics defined in SplicingGraphs + export corresponding
 ### methods
 ###
 

 export(

     ## SplicingGraphs-class.R:

     plotTranscripts,

     SplicingGraphs,
 

     ## sgedges-methods.R:

     txpaths,

     UATXHcount,

     sgedges,

     sgnodes,

     outdeg, indeg,

     uninformativeSSids,
 
     ## sgraph-methods.R:

     sgraph,
 
     ## bubbles-methods.R:
     bubbles

 )
 

 ### Exactly the same list as above.

 exportMethods(

     plotTranscripts,

     SplicingGraphs,

     txpaths,

     UATXHcount,

     sgedges,

     sgnodes,

     outdeg, indeg,

     uninformativeSSids,

     sgraph,
     bubbles

 )