@@ -1,7 +1,7 @@

 Package: SplicingGraphs

 Title: Create, manipulate, visualize splicing graphs, and assign RNA-seq reads

 	to them

-Version: 1.19.1

+Version: 1.19.2

 Encoding: UTF-8

 Author: D. Bindreither, M. Carlson, M. Morgan, H. Pagès

 License: Artistic-2.0

@@ -210,7 +210,7 @@ setMethod("[", "SplicingGraphs",

         seqx <- seq_along(x_genes)

         names(seqx) <- names(x_genes)

         i <- seqx[i]

-        ii <- unlist(IRanges(PartitioningByEnd(x_genes))[i], use.names=FALSE)

+        ii <- IRanges:::unlist_as_integer(IRanges(PartitioningByEnd(x_genes))[i])

         x@genes <- x_genes[i]

         x@in_by_tx <- x@in_by_tx[ii]

         x

@@ -501,6 +501,7 @@ setMethod("show", "SplicingGraphs",

 {

     if (!is(x, "GRangesList"))

         stop("'x' must be a GRangesList object")

+    metadata(x) <- list()

     if (is.null(grouping)) {

         if (!identical(min.ntx, 2) || !identical(max.ntx, NA))

             stop("the 'min.ntx' and 'max.ntx' args are not supported ",

Binary files a/vignettes/precomputed_results/sg_with_bubbles.rda and b/vignettes/precomputed_results/sg_with_bubbles.rda differ

Binary files a/vignettes/precomputed_results/sg_with_reads.rda and b/vignettes/precomputed_results/sg_with_reads.rda differ