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View 5712a4d
- Split SplicingGraphs-class.R in 3 files: SplicingGraphs-class.R, sgdf-methods.R, and sgraph-methods.R. And split the corresponding man page accordingly. - Rename Spath(), Sgdf(), Sgraph() -> spath(), sgdf(), sgraph().
Herve Pages authored on 28/02/2013 21:57:06
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View c5b71e0
update aliases in SplicingGraphs-class.Rd man page
Herve Pages authored on 28/02/2013 20:14:53
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View 4f96879
- Define and use the SplicingGraphs S4 container for storing the splicing graphs instead of of a bare GRangesList object. - Replace splicingGraphs() function by SplicingGraphs() constructor. - Make length(), names(), elementLengths(), plot(), findOverlaps(), and encodeOverlaps() work on SplicingGraphs objects by defining appropriate methods. - Replace "Spath" and "UATXHcount" methods for GRangesList objects by methods for SplicingGraphs objects.
Herve Pages authored on 28/02/2013 19:57:05
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