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View 788b154
Work around a regression in R 3.4.2. The regression breaks calling the paste() generic defined in BiocGenerics in some particular contexts.Hervé Pagès authored on 04/10/2017 01:07:00 |
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View 7ff5c4a
Renamed txpaths() -> txpath().Herve Pages authored on 28/03/2013 22:58:26 |
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View 24537e9
Add cache mechanism for the bubbles of a SplicingGraphs object.Herve Pages authored on 15/03/2013 06:59:19 |
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View 1e91f9e
remove unused stuffHerve Pages authored on 15/03/2013 02:24:09 |
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View 808fe39
Remove 'gene_id' arg from txpaths(), UATXHcount(), sgedges(), sgnodes(), outdeg(), indeg(), uninformativeSSids(), sgedges2(), sgraph(), sgraph2(), bubbles(), and "plot" method for SplicingGraphs. Not needed anymore since selecting a gene can now be achieved by subsetting the SplicingGraphs object 'sg' before passing it to these functions (e.g. by doing 'sgedges(sg["geneA"])' instead of 'sgedges(sg, gene_id="geneA")').Herve Pages authored on 12/03/2013 05:12:23 |
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View 5068a9c
- Add file containing 50 Most Frequent Patterns of Internal Complete Events Found in Human, as reported in Table 1 of Sammeth M. 2009 paper. - Use the above data to provide bubble description, when available.Herve Pages authored on 08/03/2013 10:21:03 |
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View 66d11e3
add some comment in the source codeHerve Pages authored on 08/03/2013 08:21:41 |
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View b733d2c
First working version of bubbles().Herve Pages authored on 08/03/2013 02:17:04 |
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View 9e7ad60
Start to fix bubbles() implementation.Herve Pages authored on 07/03/2013 06:11:46 |
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View 0544366
Rename spath() -> txpaths().Herve Pages authored on 06/03/2013 20:28:00 |
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View 261b473
Add bubbles() for extracting the bubbles of a splicing graph.Herve Pages authored on 06/03/2013 07:44:09 |
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View 334319e
Add "sgnodes" methods for IntegerList, data.frame, and DataFrame objects.Herve Pages authored on 06/03/2013 03:41:48 |
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View b72ecce
Rename sgdf() and sgdf2() -> sgedges() and sgedges2().Herve Pages authored on 06/03/2013 01:25:42 |