Package: SummarizedExperiment

 Title: A container (S4 class) for matrix-like assays

 Description: The SummarizedExperiment container contains one or more assays,
 	each represented by a matrix-like object of numeric or other mode.
 	The rows typically represent genomic ranges of interest and the columns
 	represent samples.

 biocViews: Genetics, Infrastructure, Sequencing, Annotation, Coverage,
 	GenomeAnnotation
 URL: https://bioconductor.org/packages/SummarizedExperiment
 BugReports: https://github.com/Bioconductor/SummarizedExperiment/issues

 Version: 1.39.1

 License: Artistic-2.0

 Encoding: UTF-8

 Authors@R: c(
 	person("Martin", "Morgan", role="aut"),
 	person("Valerie", "Obenchain", role="aut"),
 	person("Jim", "Hester", role="aut"),
 	person("Hervé", "Pagès", role=c("aut", "cre"),
 		email="[email protected]"))

 Depends: R (>= 4.0.0), methods, MatrixGenerics (>= 1.1.3),

 	GenomicRanges (>= 1.61.1), Biobase

 Imports: utils, stats, tools, Matrix,

 	BiocGenerics (>= 0.51.3), S4Vectors (>= 0.33.7), IRanges (>= 2.23.9),

 	Seqinfo, S4Arrays (>= 1.1.1), DelayedArray (>= 0.31.12)
 Suggests: GenomeInfoDb (>= 1.45.5), rhdf5, HDF5Array (>= 1.7.5), annotate,
 	AnnotationDbi, GenomicFeatures, SparseArray, SingleCellExperiment,

 	TxDb.Hsapiens.UCSC.hg19.knownGene, hgu95av2.db, airway (>= 1.15.1),
 	BiocStyle, knitr, rmarkdown, RUnit, testthat, digest

 VignetteBuilder: knitr

 Collate: Assays-class.R

 	SummarizedExperiment-class.R

 	RangedSummarizedExperiment-class.R

 	intra-range-methods.R

 	inter-range-methods.R

 	coverage-methods.R

 	combine-methods.R

 	findOverlaps-methods.R
 	nearest-methods.R

 	makeSummarizedExperimentFromExpressionSet.R

 	makeSummarizedExperimentFromDataFrame.R

 	makeSummarizedExperimentFromLoom.R

 	zzz.R