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@@ -1,3 +1,26 @@
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+CHANGES IN VERSION 1.36.0
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+-------------------------
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+
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+NEW FEATURES
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+
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+ o Calling saveRDS() on a SummarizedExperiment object that contains
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+ out-of-memory data now raises an error with a message that redirects
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+ the user to HDF5Array::saveHDF5SummarizedExperiment().
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+
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+SIGNIFICANT USER-VISIBLE CHANGES
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+ o Move documentation of constructor function SummarizedExperiment()
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+ from RangedSummarizedExperiment-class.Rd to SummarizedExperiment-class.Rd.
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+ See https://github.com/Bioconductor/SummarizedExperiment/issues/80
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+
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+ o Change default value of 'rowData' argument in SummarizedExperiment()
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+ constructor from GRangesList() to NULL.
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+
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+BUG FIXES
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+ o Fix typos in error message from assay() and assays() setters.
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CHANGES IN VERSION 1.34.0
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@@ -147,15 +170,15 @@ SIGNIFICANT USER-VISIBLE CHANGES
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o Swap positions of arguments '...' and 'withDimnames' in assays()
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setter and getter. So now it's:
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assays(x, withDimnames=TRUE, ...)
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assays(x, withDimnames=TRUE, ...) <- value
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o Add 'withDimnames' argument to the assay() getter/setter. So now it's:
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assay(x, i, withDimnames=TRUE, ...)
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assay(x, i, withDimnames=TRUE, ...) <- value
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+
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Note that before this change, the user was able to explicitly set
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'withDimnames' when calling assay() but since this was not a formal
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argument it was forwarded to assays() via the ellipsis. Having it as
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