% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/TENxIO-package.R
 \docType{package}
 \name{TENxIO}
 \alias{TENxIO}
 \alias{TENxIO-package}
 \title{TENxIO: A Bioconductor package for importing 10X Genomics files}
 \description{
 The package provides file classes based on \code{BiocIO} for common file
 extensions found in the 10X Genomics website.
 }
 \section{Supported file types}{
 
 Here is a table of supported file and file extensions and their imported
 classes:\tabular{lll}{
    \strong{Extension} \tab \strong{Class} \tab \strong{Imported as} \cr

    .h5 \tab TENxH5 \tab SingleCellExperiment w/ TENxMatrix \cr

    .mtx / .mtx.gz \tab TENxMTX \tab SummarizedExperiment w/ dgCMatrix \cr

    .tar.gz \tab TENxFileList \tab SingleCellExperiment w/ dgCMatrix \cr

    peak_annotation.tsv \tab TENxPeaks \tab GRanges \cr
    fragments.tsv.gz \tab TENxFragments \tab RaggedExperiment \cr

    .tsv / .tsv.gz \tab TENxTSV \tab tibble \cr

 }
 }
 
 \seealso{
 Useful links:
 \itemize{
   \item \url{https://github.com/waldronlab/TENxIO}
   \item Report bugs at \url{https://github.com/waldronlab/TENxIO/issues}
 }
 
 }
 \author{

 \strong{Maintainer}: Marcel Ramos \email{[email protected]} (\href{https://orcid.org/0000-0002-3242-0582}{ORCID})

 
 }