% Generated by roxygen2: do not edit by hand % Please edit documentation in R/TENxMTX-class.R \name{TENxMTX} \alias{TENxMTX} \title{TENxMTX: Represent Matrix Market Format Files from 10X} \usage{ TENxMTX(resource, compressed = FALSE, ...) } \arguments{ \item{resource}{character(1) The path to the file} \item{compressed}{logical(1) Whether the resource file is compressed (default FALSE)} \item{...}{Additional inputs to the low level class generator functions} } \value{ A \code{SummarizedExperiment} instance with a \code{dgCMatrix} in the assay } \description{ This constructor function accepts \code{.mtx} and \code{.mtx.gz} compressed formats for eventual importing. It is mainly used with tarball files from 10X Genomics, where more annotation data is included. Importing solely the \code{.mtx} format will provide users with a \code{SummarizedExperiment} with an assay of class \code{dgCMatrix} from the \code{Matrix} package. Currently, other formats are not supported but if you'd like to request support for a format, please open an issue on GitHub. } \examples{ mtxf <- system.file( "extdata", "pbmc_3k_ff_bc_ex.mtx", package = "TENxIO", mustWork = TRUE ) con <- TENxMTX(mtxf) import(con) }