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o Fixed the R CMD check warnings for R v2.5.0. One Rd error, and one invalid escape character ('\[' should be '\\[').

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/affxparser@21691 bc3139a8-67e5-0310-9ffc-ced21a209358

Henrik Bengtsson authored on 28/12/2006 10:33:12
Showing 2 changed files

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@@ -51,7 +51,7 @@
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   header2 <- gsub(pattern, "\\2", header);
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   bfr <- trim(bfr);                           # Example: "[12..40151]  Fetal 3"
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-  pattern <- "^([^\]]*])[ ]*(.*)[ ]*";
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+  pattern <- "^([^\\]]*])[ ]*(.*)[ ]*";
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   pixelRange <- gsub(pattern, "\\1", bfr);
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   sampleName <- gsub(pattern, "\\2", bfr);
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@@ -264,6 +264,10 @@
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 ############################################################################
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 # HISTORY:
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+# 2006-12-28
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+# o R CMD check v2.5.0 devel complained about: Warning: '\]' is an 
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+#   unrecognized escape in a character string. Warning: unrecognized escape
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+#   removed from "^([^\]]*])[ ]*(.*)[ ]*".  Replaced with '\\]'.
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 # 2006-09-10
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 # o BUG FIX: Local trim() was missing in one of the private functions.
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 # 2006-09-06
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@@ -10,7 +10,13 @@
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 }
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 \usage{
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-  readCdf(filename, units = NULL, verbose = 0)
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+ readCdf(filename, units=NULL, readXY=TRUE, readBases=TRUE, 
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+         readIndexpos=TRUE, readIsPm=FALSE, readAtoms=TRUE, 
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+         readUnitType=TRUE, readUnitDirection=TRUE, readUnitNumber=FALSE, 
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+         readUnitAtomNumbers=FALSE, readGroupAtomNumbers=FALSE, 
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+         readGroupDirection=FALSE, 
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+         stratifyBy=c("nothing", "pmmm", "pm", "mm"), readIndices=FALSE, 
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+         verbose=0)
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 }
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 \arguments{