git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/affxparser@21691 bc3139a8-67e5-0310-9ffc-ced21a209358
... | ... |
@@ -51,7 +51,7 @@ |
51 | 51 |
header2 <- gsub(pattern, "\\2", header); |
52 | 52 |
|
53 | 53 |
bfr <- trim(bfr); # Example: "[12..40151] Fetal 3" |
54 |
- pattern <- "^([^\]]*])[ ]*(.*)[ ]*"; |
|
54 |
+ pattern <- "^([^\\]]*])[ ]*(.*)[ ]*"; |
|
55 | 55 |
pixelRange <- gsub(pattern, "\\1", bfr); |
56 | 56 |
sampleName <- gsub(pattern, "\\2", bfr); |
57 | 57 |
|
... | ... |
@@ -264,6 +264,10 @@ |
264 | 264 |
|
265 | 265 |
############################################################################ |
266 | 266 |
# HISTORY: |
267 |
+# 2006-12-28 |
|
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+# o R CMD check v2.5.0 devel complained about: Warning: '\]' is an |
|
269 |
+# unrecognized escape in a character string. Warning: unrecognized escape |
|
270 |
+# removed from "^([^\]]*])[ ]*(.*)[ ]*". Replaced with '\\]'. |
|
267 | 271 |
# 2006-09-10 |
268 | 272 |
# o BUG FIX: Local trim() was missing in one of the private functions. |
269 | 273 |
# 2006-09-06 |
... | ... |
@@ -10,7 +10,13 @@ |
10 | 10 |
} |
11 | 11 |
|
12 | 12 |
\usage{ |
13 |
- readCdf(filename, units = NULL, verbose = 0) |
|
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+ readCdf(filename, units=NULL, readXY=TRUE, readBases=TRUE, |
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+ readIndexpos=TRUE, readIsPm=FALSE, readAtoms=TRUE, |
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+ readUnitType=TRUE, readUnitDirection=TRUE, readUnitNumber=FALSE, |
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+ readUnitAtomNumbers=FALSE, readGroupAtomNumbers=FALSE, |
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+ readGroupDirection=FALSE, |
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+ stratifyBy=c("nothing", "pmmm", "pm", "mm"), readIndices=FALSE, |
|
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+ verbose=0) |
|
14 | 20 |
} |
15 | 21 |
|
16 | 22 |
\arguments{ |