Version: 1.14.1 [2008-12-04]
o BUG FIX: When the CDF file is on a Windows network, that is,
has a pathname starting with '//' or '\\', then the 'chiptype'
reported by readCdfHeader() contains a path component as well.
This seems to be due to a bug in Fusion SDK.
git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/affxparser@35664 bc3139a8-67e5-0310-9ffc-ced21a209358
... | ... |
@@ -1,4 +1,4 @@ |
1 |
-readCdfHeader <- function(filename){ |
|
1 |
+readCdfHeader <- function(filename) { |
|
2 | 2 |
# Expand '~' pathnames to full pathnames. |
3 | 3 |
filename <- file.path(dirname(filename), basename(filename)); |
4 | 4 |
if (!file.exists(filename)) |
... | ... |
@@ -13,5 +13,11 @@ readCdfHeader <- function(filename){ |
13 | 13 |
res$qcprobesets <- res$nqcunits; |
14 | 14 |
res$reference <- res$refseq; |
15 | 15 |
|
16 |
+ # Workaround for a bug in Fusion SDK. /HB 2008-12-04 |
|
17 |
+ # If the CDF file is on a Windows share, then the from |
|
18 |
+ # pathname inferred chip type contains a path as well. |
|
19 |
+ # Reference: See aroma.affymetrix thread on Dec 4, 2008. |
|
20 |
+ res$chiptype <- basename(res$chiptype); |
|
21 |
+ |
|
16 | 22 |
res; |
17 | 23 |
} |
... | ... |
@@ -1,10 +1,30 @@ |
1 | 1 |
Package: affxparser |
2 | 2 |
=================== |
3 | 3 |
|
4 |
+Version: 1.15.1 [2008-12-04] |
|
5 |
+o Same bug fix as in release version v1.14.1. |
|
6 |
+ |
|
7 |
+ |
|
8 |
+Version: 1.15.0 [2008-10-21] |
|
9 |
+o Devel version bumped because of the new Bioconductor release. |
|
10 |
+ |
|
11 |
+ |
|
12 |
+Version: 1.14.1 [2008-12-04] |
|
13 |
+o BUG FIX: When the CDF file is on a Windows network, that is, |
|
14 |
+ has a pathname starting with '//' or '\\', then the 'chiptype' |
|
15 |
+ reported by readCdfHeader() contains a path component as well. |
|
16 |
+ This seems to be due to a bug in Fusion SDK. |
|
17 |
+ |
|
18 |
+ |
|
19 |
+Version: 1.14.0 [2008-10-21] |
|
20 |
+o Release version bumped because of the new Bioconductor release. |
|
21 |
+ |
|
22 |
+ |
|
4 | 23 |
Version: 1.13.8 [2008-08-28] |
5 | 24 |
o Fix of include statements in Fusion, details are described in |
6 | 25 |
inst/info/changes2fusion.txt. This fixes an issue with GCC 4.3 |
7 | 26 |
|
27 |
+ |
|
8 | 28 |
Version: 1.13.7 [2008-08-23] |
9 | 29 |
o SPEED UP: readCcg() is substantially faster after removing |
10 | 30 |
all gc() calls. |