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Version: 1.15.1 [2008-12-04] o Same bug fix as in release version v1.14.1.

Version: 1.14.1 [2008-12-04]
o BUG FIX: When the CDF file is on a Windows network, that is,
has a pathname starting with '//' or '\\', then the 'chiptype'
reported by readCdfHeader() contains a path component as well.
This seems to be due to a bug in Fusion SDK.


git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/affxparser@35664 bc3139a8-67e5-0310-9ffc-ced21a209358

Henrik Bengtsson authored on 05/12/2008 05:33:40
Showing 3 changed files

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@@ -1,6 +1,6 @@
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 Package: affxparser
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-Version: 1.15.0
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-Date: 2008-08-28
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+Version: 1.15.1
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+Date: 2008-12-04
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 Title: Affymetrix File Parsing SDK
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 Author: Henrik Bengtsson, James Bullard, Kasper Daniel Hansen
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 Maintainer: Kasper Daniel Hansen <[email protected]>
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-readCdfHeader <- function(filename){
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+readCdfHeader <- function(filename) {
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   # Expand '~' pathnames to full pathnames.
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   filename <- file.path(dirname(filename), basename(filename));
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   if (!file.exists(filename))
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@@ -13,5 +13,11 @@ readCdfHeader <- function(filename){
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   res$qcprobesets <- res$nqcunits;
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   res$reference <- res$refseq;
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+  # Workaround for a bug in Fusion SDK. /HB 2008-12-04
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+  # If the CDF file is on a Windows share, then the from
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+  # pathname inferred chip type contains a path as well.
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+  # Reference: See aroma.affymetrix thread on Dec 4, 2008.
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+  res$chiptype <- basename(res$chiptype);
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+
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   res;
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 }
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 Package: affxparser
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 ===================
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+Version: 1.15.1 [2008-12-04]
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+o Same bug fix as in release version v1.14.1.
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+
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+
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+Version: 1.15.0 [2008-10-21]
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+o Devel version bumped because of the new Bioconductor release.
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+
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+
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+Version: 1.14.1 [2008-12-04]
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+o BUG FIX: When the CDF file is on a Windows network, that is,
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+  has a pathname starting with '//' or '\\', then the 'chiptype'
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+  reported by readCdfHeader() contains a path component as well.
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+  This seems to be due to a bug in Fusion SDK.
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+
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+
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+Version: 1.14.0 [2008-10-21]
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+o Release version bumped because of the new Bioconductor release.
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+
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+
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 Version: 1.13.8 [2008-08-28]
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 o Fix of include statements in Fusion, details are described in
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 inst/info/changes2fusion.txt. This fixes an issue with GCC 4.3
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+
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 Version: 1.13.7 [2008-08-23]
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 o SPEED UP: readCcg() is substantially faster after removing 
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   all gc() calls.