1. arrayQualityMetrics
  2. Graph
Graph of arrayQualityMetrics
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • |\
  • * |
  • | *
  • | *
  • |/
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • |\
  • * |
  • | *
  • |/|
  • * |
  • * |
  • | *
  • |/
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • | *
  • |/
  • *
  • *
  • *
  • *
  • | *
  • |/
  • *
  • | *
  • * |
  • | *
  • * |
  • * |
  • | *
  • |/
  • *
  • *
  • | *
  • * |
  • * |
  • | *
  • |/
  • *
  • *
  • | *
  • |/
  • *
  • *
  • | *
  • * |
  • * |
  • * |
  • | *
  • |/
  • *
  • *
  • *
  • | *
  • |/
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • | *
  • |/
  • *
  • 4bc554f (HEAD -> devel, origin/devel, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_21 branch by A Wokaty <[email protected]> 2025-04-15 09:40:45 -0400;
  • 4a2f657 (origin/RELEASE_3_21, RELEASE_3_21) bump x.y.z version to even y prior to creation of RELEASE_3_21 branch by A Wokaty <[email protected]> 2025-04-15 09:40:45 -0400;
  • c608533 (origin/master) bump x.y.z version to odd y following creation of RELEASE_3_20 branch by J Wokaty <[email protected]> 2024-10-29 09:28:09 -0400;
  • addcbf2 (origin/RELEASE_3_20, RELEASE_3_20) bump x.y.z version to even y prior to creation of RELEASE_3_20 branch by J Wokaty <[email protected]> 2024-10-29 09:28:09 -0400;
  • 00bb3ba bump x.y.z version to odd y following creation of RELEASE_3_19 branch by J Wokaty <[email protected]> 2024-04-30 10:17:13 -0400;
  • 85b2952 (origin/RELEASE_3_19, RELEASE_3_19) bump x.y.z version to even y prior to creation of RELEASE_3_19 branch by J Wokaty <[email protected]> 2024-04-30 10:17:13 -0400;
  • af80579 bump x.y.z version to odd y following creation of RELEASE_3_18 branch by J Wokaty <[email protected]> 2023-10-24 09:38:50 -0400;
  • bfaad3b (origin/RELEASE_3_18, RELEASE_3_18) bump x.y.z version to even y prior to creation of RELEASE_3_18 branch by J Wokaty <[email protected]> 2023-10-24 09:38:50 -0400;
  • 7511bd3 bump x.y.z version to odd y following creation of RELEASE_3_17 branch by J Wokaty <[email protected]> 2023-04-25 09:45:46 -0400;
  • 26deab2 (origin/RELEASE_3_17, RELEASE_3_17) bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by J Wokaty <[email protected]> 2023-04-25 09:45:46 -0400;
  • 346f0c8 bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <[email protected]> 2022-11-01 11:03:33 -0400;
  • 8dfb5dd (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <[email protected]> 2022-11-01 11:03:33 -0400;
  • e6ca80d bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <[email protected]> 2022-04-26 15:00:12 +0000;
  • f868c74 (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <[email protected]> 2022-04-26 15:00:12 +0000;
  • fe025bb bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <[email protected]> 2021-10-26 15:51:28 +0000;
  • 784f433 (origin/RELEASE_3_14, RELEASE_3_14) bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <[email protected]> 2021-10-26 15:51:28 +0000;
  • 4838486 bump x.y.z version to odd y following creation of RELEASE_3_13 branch by Nitesh Turaga <[email protected]> 2021-05-19 15:39:30 +0000;
  • 61bf05b (origin/RELEASE_3_13, RELEASE_3_13) bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by Nitesh Turaga <[email protected]> 2021-05-19 15:39:30 +0000;
  • 2ac069e bump x.y.z version to odd y following creation of RELEASE_3_12 branch by Nitesh Turaga <[email protected]> 2020-10-27 10:31:46 -0400;
  • 2bc0f4e (origin/RELEASE_3_12, RELEASE_3_12) bump x.y.z version to even y prior to creation of RELEASE_3_12 branch by Nitesh Turaga <[email protected]> 2020-10-27 10:31:46 -0400;
  • 16ff64b bump x.y.z version to odd y following creation of RELEASE_3_11 branch by Nitesh Turaga <[email protected]> 2020-04-27 18:15:36 +0000;
  • 5b2bc23 (origin/RELEASE_3_11, RELEASE_3_11) bump x.y.z version to even y prior to creation of RELEASE_3_11 branch by Nitesh Turaga <[email protected]> 2020-04-27 18:15:36 +0000;
  • bc65f71 bump x.y.z version to odd y after creation of RELEASE_3_10 branch by Nitesh Turaga <[email protected]> 2019-10-29 13:34:46 -0400;
  • 6ebb828 (origin/RELEASE_3_10, RELEASE_3_10) bump x.y.z version to even y prior to creation of RELEASE_3_10 branch by Nitesh Turaga <[email protected]> 2019-10-29 13:07:51 -0400;
  • 81c1092 bump x.y.z versions to odd y after creation of RELEASE_3_9 branch by Nitesh Turaga <[email protected]> 2019-05-02 12:10:45 -0400;
  • e76b21d (origin/RELEASE_3_9, RELEASE_3_9) bump x.y.z versions to even y prior to creation of RELEASE_3_9 branch by Nitesh Turaga <[email protected]> 2019-05-02 11:53:08 -0400;
  • bcd939a Bump version by Mike Smith <[email protected]> 2019-01-27 18:00:31 +0100;
  • 99a7aec Merge remote-tracking branch 'bioc/master' by Mike Smith <[email protected]> 2019-01-27 17:59:49 +0100;
  • 69cdff4 Change dependence on Cairo for svglite by Mike Smith <[email protected]> 2019-01-27 17:57:51 +0100;
  • f9dbc77 bump x.y.z versions to odd y after creation of RELEASE_3_8 branch by vobencha <[email protected]> 2018-10-30 11:54:27 -0400;
  • 4c80bb4 (origin/RELEASE_3_8, RELEASE_3_8) bump x.y.z versions to even y prior to creation of RELEASE_3_8 branch by vobencha <[email protected]> 2018-10-30 11:41:44 -0400;
  • 8094652 Catch problem trying to access pData for an MAList by Mike Smith <[email protected]> 2018-08-01 14:06:26 +0200;
  • 7c32317 bump x.y.z versions to odd y after creation of RELEASE_3_7 branch by vobencha <[email protected]> 2018-04-30 10:41:37 -0400;
  • f6a0ee6 (origin/RELEASE_3_7, RELEASE_3_7) bump x.y.z versions to even y prior to creation of RELEASE_3_7 branch by vobencha <[email protected]> 2018-04-30 10:35:07 -0400;
  • 698b6f5 increase the number of retained phenotype columns by Mike Smith <[email protected]> 2017-12-20 11:12:37 +0100;
  • 8703618 bump x.y.z versions to odd y after creation of RELEASE_3_6 branch by Hervé Pagès <[email protected]> 2017-10-30 12:52:07 -0400;
  • 5b018d7 (origin/RELEASE_3_6, RELEASE_3_6) bump x.y.z versions to even y prior to creation of RELEASE_3_6 branch by Hervé Pagès <[email protected]> 2017-10-30 12:39:21 -0400;
  • d9c0416 Added BugReports field linking to github by Mike Smith <[email protected]> 2017-10-12 10:48:50 +0200;
  • d30837a More travis fixes by Mike Smith <[email protected]> 2017-10-11 16:37:11 +0200;
  • 766659b Installed require latex fonts in travis by Mike Smith <[email protected]> 2017-10-11 16:19:23 +0200;
  • 15e5cb2 Merge branch 'master' of github.com:grimbough/arrayQualityMetrics by Mike Smith <[email protected]> 2017-10-11 15:55:49 +0200;
  • dc456a7 Added travis integration by Mike Smith <[email protected]> 2017-10-11 15:55:19 +0200;
  • 9204c81 Merge pull request <a href="#1">#1</a> from wbazant/master by Mike Smith <[email protected]> 2017-10-11 15:47:50 +0200;
  • 5a2f554 Added denbi details to README by Mike Smith <[email protected]> 2017-10-11 15:20:07 +0200;
  • 62dee9c Added deNBI logo by Mike Smith <[email protected]> 2017-10-11 15:12:43 +0200;
  • 49242ff Fix up an infinite loop in Javascript that forbids the page from loading by wbazant <[email protected]> 2017-10-11 11:06:54 +0100;
  • d541b03 Added readme by Mike Smith <[email protected]> 2017-10-10 15:23:29 +0200;
  • ed3f345 Removed SVGAnnoation dependency in DESCRIPTION by Mike Smith <[email protected]> 2017-10-10 12:35:26 +0200;
  • 0107a98 Fixed problem where intgroup not passed to all functions by Mike Smith <[email protected]> 2017-10-04 11:04:50 +0200;
  • e584e55 Use the updated 'BiocStyle::latex' function instead of its deprecated alias by aoles <[email protected]> 2017-08-23 11:50:20 +0200;
  • eb36a8a Remove dependence on SVGAnnotation by Mike Smith <[email protected]> 2017-07-27 16:31:09 +0000;
  • 966af21 Added Mike as a maintainer by Wolfgang Huber <[email protected]> 2017-07-22 09:30:00 +0000;
  • f91c264 bump x.y.z versions to odd y after creation of 3_5 branch by Herve Pages <[email protected]> 2017-04-24 19:50:57 +0000;
  • bfa17dc (origin/RELEASE_3_5, RELEASE_3_5) Creating branch for BioC 3.5 release by Herve Pages <[email protected]> 2017-04-24 19:45:44 +0000;
  • fb04bc9 bump x.y.z versions to even y prior to creation of 3_5 branch by Herve Pages <[email protected]> 2017-04-24 19:25:24 +0000;
  • d60900e Add missing imports and rename call to a removed function by Andrzej Oleś <[email protected]> 2016-11-29 13:17:53 +0000;
  • aa34397 Atttempt at fixing the bug reported in https://support.bioconductor.org/p/89825/ by Wolfgang Huber <[email protected]> 2016-11-29 09:24:28 +0000;
  • 3bbe949 bump x.y.z versions to odd 'y' after creation of 3_4 branch by Herve Pages <[email protected]> 2016-10-17 19:10:43 +0000;
  • a87e343 (origin/RELEASE_3_4, RELEASE_3_4) Creating branch for BioC 3.4 release by Herve Pages <[email protected]> 2016-10-17 19:00:47 +0000;
  • e3768d6 bump x.y.z versions to even 'y' prior to creation of 3_4 branch by Herve Pages <[email protected]> 2016-10-17 18:45:06 +0000;
  • b5f1f41 (origin/RELEASE_3_3, RELEASE_3_3) Version bump to trigger package rebuilding now that purl()'ing issue has been correctly identified. knitr does not create purl()'ed (Stangle equivalent) .R files if _R_CHECK_TIMINGS_ is set, which the build system was setting. Now it's not set, so these .R files are now created. See https://github.com/yihui/knitr/issues/1212 for more. by Dan Tenenbaum <[email protected]> 2016-05-15 20:18:19 +0000;
  • 6782176 Version bump to trigger package rebuilding now that purl()'ing issue has been correctly identified. knitr does not create purl()'ed (Stangle equivalent) .R files if _R_CHECK_TIMINGS_ is set, which the build system was setting. Now it's not set, so these .R files are now created. See https://github.com/yihui/knitr/issues/1212 for more. by Dan Tenenbaum <[email protected]> 2016-05-15 20:14:22 +0000;
  • 9f754dd Bump version of all packages that use knitr for vignettes. This is because of an issue (now fixed) in knitr which failed to create purl()'ed R files from vignette sources and include them in the package. This version bump will cause these packages to propagate with those R files included. by Dan Tenenbaum <[email protected]> 2016-05-11 23:15:25 +0000;
  • 53f2533 Bump version of all packages that use knitr for vignettes. This is because of an issue (now fixed) in knitr which failed to create purl()'ed R files from vignette sources and include them in the package. This version bump will cause these packages to propagate with those R files included. by Dan Tenenbaum <[email protected]> 2016-05-11 23:05:31 +0000;
  • ee199ec bump version after creating 3.3 branch by Dan Tenenbaum <[email protected]> 2016-05-03 21:30:44 +0000;
  • edfff15 Creating branch for BioC 3.3 release. by Dan Tenenbaum <[email protected]> 2016-05-03 21:26:31 +0000;
  • 41770e2 Bump versions prior to creation of 3.3 branch by Dan Tenenbaum <[email protected]> 2016-05-03 21:20:18 +0000;
  • 920c713 Testing BiocStyle:::latex2() by Andrzej Oleś <[email protected]> 2016-03-21 23:10:44 +0000;
  • 6de7e6f (origin/RELEASE_3_2, RELEASE_3_2) Backport of the meadSdPlot fix (which was already committed to trunk in since revision 112370) also to the release branch. by Wolfgang Huber <[email protected]> 2016-01-12 20:23:38 +0000;
  • 226e944 Removed a superfluous argument 'cex.axis' in call to vsn::meanSdPlot, to fix the problem reported in https://support.bioconductor.org/p/76626/ Thanks to Mike Smith for figuring this out. by Wolfgang Huber <[email protected]> 2016-01-08 22:46:39 +0000;
  • 8ec002e Bumped version number of all packages after creation of 3.2 branch. by Dan Tenenbaum <[email protected]> 2015-10-13 19:59:53 +0000;
  • 70a3eee Creating branch for BioC 3.2 release. by Dan Tenenbaum <[email protected]> 2015-10-13 19:57:33 +0000;
  • 1f47391 Bumped versions of all packages prior to creating 3.2 branch. by Dan Tenenbaum <[email protected]> 2015-10-13 19:36:05 +0000;
  • 035a278 Bump versions in trunk after creation of 3.1 branch. by Dan Tenenbaum <[email protected]> 2015-04-16 20:02:44 +0000;
  • dfc44be (origin/RELEASE_3_1, RELEASE_3_1) Creating branch for BioC 3.1 release. by Dan Tenenbaum <[email protected]> 2015-04-16 20:00:01 +0000;
  • e6243e8 Bump versions prior to creating 3.1 branch. by Dan Tenenbaum <[email protected]> 2015-04-16 19:42:01 +0000;
  • b37e0e6 Fixed a scoping/evaluation problem in the call to 'gridsvg' by Wolfgang Huber <[email protected]> 2014-12-22 12:27:28 +0000;
  • d3bbc22 (origin/RELEASE_3_0, RELEASE_3_0) merged r97842 from trunk: Made explicit the dependency on gridSVG >= 1.4-3, see also https://support.bioconductor.org/p/63781 by Wolfgang Huber <[email protected]> 2014-12-22 11:31:56 +0000;
  • 1433177 Made explicit the dependency on gridSVG >= 1.4-3, see also https://support.bioconductor.org/p/63781/ by Wolfgang Huber <[email protected]> 2014-12-22 11:24:22 +0000;
  • 085cbcc Now using fully grDevices::dev.off() and gridSVG::dev.off() to avoid any potential confusion with name masking. Expanded some comments. by Wolfgang Huber <[email protected]> 2014-12-21 14:47:04 +0000;
  • ddf1445 Bumping versions after creating 3.0 release branch. by Dan Tenenbaum <[email protected]> 2014-10-13 21:47:41 +0000;
  • 1a5ae4b Creating branch for BioC 3.0 release. by Dan Tenenbaum <[email protected]> 2014-10-13 21:46:02 +0000;
  • c267ad1 Bump package versions prior to creating the 3.0 branch. by Dan Tenenbaum <[email protected]> 2014-10-13 21:38:33 +0000;
  • 266563e - fixed interactivity in multi-panel trellis plots - replaced calls to 'seq(along=' by 'seq_along(' - replaced calls to 'paste(..., sep = "")' by 'paste0(...)' by Andrzej Oleś <[email protected]> 2014-05-01 17:26:46 +0000;
  • fcff8dd Second version bump after creating 2.14 release branch. by Dan Tenenbaum <[email protected]> 2014-04-11 21:21:21 +0000;
  • 56336e4 (origin/RELEASE_2_14, RELEASE_2_14) Creating 2.14 release branch. by Dan Tenenbaum <[email protected]> 2014-04-11 21:17:46 +0000;
  • 8da2f26 First version bump prior to creating 2.14 branch. by Dan Tenenbaum <[email protected]> 2014-04-11 21:07:21 +0000;
  • c9dee25 Removed a now unnecessary import (simpleaffy) Fixed a typo ('error' where 'stop' was intended.) by Wolfgang Huber <[email protected]> 2014-02-08 12:09:57 +0000;
  • 2d70776 Better warning message from 'maximumLevels'. by Wolfgang Huber <[email protected]> 2014-02-08 12:05:10 +0000;
  • 9212b1e - removed verbosity from code chunk results - added line breaks in code chunks by setting 'tidy=FALSE' - fixed bibliography by Andrzej Oleś <[email protected]> 2014-01-14 16:34:12 +0000;
  • c61c03f update vignette formatting by Martin Morgan <[email protected]> 2014-01-12 17:20:02 +0000;
  • eb27f80 removed a 'browser()' that should not be in the checked in code. by Wolfgang Huber <[email protected]> 2013-12-21 00:02:39 +0000;
  • d16485d Couple of cosmetic updates. by Wolfgang Huber <[email protected]> 2013-12-20 23:59:43 +0000;
  • 91e4bb4 fixed interactive SVG plots by using gridSVG for grid graphics by Andrzej Oleś <[email protected]> 2013-11-20 16:38:01 +0000;
  • 1021d48 A little bit more verbosity in an error message. by Wolfgang Huber <[email protected]> 2013-11-01 15:03:35 +0000;
  • 8d92213 Added %\VignetteEngine{knitr::knitr} by Wolfgang Huber <[email protected]> 2013-10-21 09:22:05 +0000;
  • 5e77d5c Better error message in makeColours. Moved vignettes into 'vignettes' directory. by Wolfgang Huber <[email protected]> 2013-10-21 08:56:01 +0000;
  • 07b67cf bump version after release branch has been created by Dan Tenenbaum <[email protected]> 2013-10-14 21:47:19 +0000;
  • 82277cb (origin/RELEASE_2_13, RELEASE_2_13) Creating branch for BioC 2.13 release. by Dan Tenenbaum <[email protected]> 2013-10-14 21:43:43 +0000;
  • 58b45d0 bump versions prior to creating BioC 2.13 branch by Dan Tenenbaum <[email protected]> 2013-10-14 21:29:21 +0000;