git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/biomformat@111096 bc3139a8-67e5-0310-9ffc-ced21a209358
James Hester authored on 01/12/2015 22:52:06
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+CHANGES IN VERSION 0.3.13 |
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+------------------------- |
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+ |
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+USER-VISIBLE CHANGES |
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+ |
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+ - Added make_biom function. Creates biom object from standard R data table(s). |
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+ |
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+CHANGES IN VERSION 0.3.12 |
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+------------------------- |
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+ |
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+USER-VISIBLE CHANGES |
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+ |
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+ - No user-visible changes. All future compatibility changes. |
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+ |
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+BUG FIXES |
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+ |
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+ - Unit test changes to work with upcoming R release and new testthat version. |
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+ |
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+ - This solves Issue 4: https://github.com/joey711/biom/issues/4 |
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+ |
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+CHANGES IN VERSION 0.3.11 |
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+------------------------- |
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+ |
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+USER-VISIBLE CHANGES |
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+ |
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+ - No user-visible changes. All future CRAN compatibility changes. |
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+ |
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+BUG FIXES |
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+ |
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+ - Clarified license and project in the README.md |
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+ |
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+ - Added TODO.html, README.html, and TODO.md to .Rbuildignore (requested by CRAN) |
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+ |
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+ - Moved `biom-demo.Rmd` to `vignettes/` |
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+ |
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+ - Updated `inst/NEWS` (this) file to official format |
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+ |
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+ - Removed pre-built vignette HTML so that it is re-built during package build. |
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+ This updates things like the build-date in the vignette, but also ensures that |
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+ the user sees in the vignette the results of code that just worked with their |
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+ copy of the package. |
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+ |
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+CHANGES IN VERSION 0.3.10 |
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+------------------------- |
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+ |
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+USER-VISIBLE CHANGES |
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+ |
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+ - These changes should not affect any package behavior. |
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+ |
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+ - Some of the top-level documentation has been changed to reflect new development |
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+ location on GitHub. |
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+ |
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+BUG FIXES |
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+ |
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+ - Minor fixes for CRAN compatibility |
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+ |
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+ - This addresses Issue 1: https://github.com/joey711/biom/issues/1 |
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+ |
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+CHANGES IN VERSION 0.3.9 |
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+------------------------- |
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+ |
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+SIGNIFICANT USER-VISIBLE CHANGES |
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+ |
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+ - speed improvement for sparse matrices |
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+ |
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+NEW FEATURES |
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+ |
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+ - The `biom_data` parsing function now uses a vectorized (matrix-indexed) |
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+ assignment while parsing sparse matrices. |
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+ |
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+ - Unofficial benchmarks estimate a few 100X speedup. |
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+ |
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+CHANGES IN VERSION 0.3.8 |
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+------------------------- |
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+ |
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+SIGNIFICANT USER-VISIBLE CHANGES |
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+ |
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+ - First release version released on CRAN |