@@ -164,6 +164,8 @@ eval.args <- function(args) {

 #'     molecularProfileIds = c("acc_tcga_rppa", "acc_tcga_linear_CNA")

 #'     )

 #'

+#' @return A \linkS4class{MultiAssayExperiment} object

+#'

 #' @export

 cBioPortalData <-

     function(api, studyId = NA_character_,

@@ -59,6 +59,7 @@

 #'

 #' @md

 #'

+#' @return cBioCache: The path to the cache location

 #' @export

 cBioCache <- function(...) {

     getOption("cBioCache", setCache(..., verbose = FALSE))

@@ -84,6 +84,8 @@

 #' @param force logical (default FALSE) whether to force re-download data from

 #' remote location

 #'

+#' @return The file location of the data tarball

+#'

 #' @keywords internal

 downloadStudy <- function(cancer_study_id, use_cache = TRUE, force = FALSE)

 {

@@ -30,6 +30,9 @@ location of the cache directory}

 \item{cancer_study_id}{A single string from \code{studiesTable} associated

 with a study tarball}

 }

+\value{

+cBioCache: The path to the cache location

+}

 \description{

 Managing data downloads is important to save disk space and

 re-downloading data files. This can be done effortlessly via the integrated

@@ -31,6 +31,9 @@ from the `genePanels` function}

 \item{by}{character(1) Either 'entrezGeneId' or 'hugoGeneSymbol' for row

 metadata}

 }

+\value{

+A \linkS4class{MultiAssayExperiment} object

+}

 \description{

 Obtain a `MultiAssayExperiment` object for a particular gene panel,

 `studyId`, `molecularProfileIds`, and `sampleListIds` combination. Default

@@ -17,6 +17,9 @@ not be re-downloaded. A path can also be provided to data cache location.}

 \item{force}{logical (default FALSE) whether to force re-download data from

 remote location}

 }

+\value{

+The file location of the data tarball

+}

 \description{

 Provide a `cancer_study_id` from the `studiesTable` and retrieve

 the study tarball from cBioPortal