% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/filter_low_qual_cells.R
 \name{feature_generation}
 \alias{feature_generation}
 \title{Helper Function to create all features}
 \usage{
 feature_generation(counts_nm, read_metrics, GO_terms, extra_genes, organism)
 }
 \arguments{
 \item{counts_nm}{Gene expression counts dataframe (genes x cells). Either 
 normalised by library size or TPM values}
 
 \item{read_metrics}{Dataframe with mapping statistics produced by python 
 pipeline}
 
 \item{GO_terms}{DataFrame with gene ontology term IDs, that will be used in 
 feature extraction}
 
 \item{extra_genes}{Additional genes used for feature extraction}
 
 \item{organism}{The target organism to generate the features for}
 }
 \value{
 Returns the entire set of features in a data.frame
 }
 \description{
 Helper Function to create all features
 }