| 5615c25d | Package: circRNAprofiler Type: Package |
| 77c5894c | Title: circRNAprofiler: An R-Based Computational Framework for the Downstream Analysis of Circular RNAs |
| 0e1b5345 | Version: 1.23.1 |
| 5615c25d | Author: Simona Aufiero |
| e54404c1 | Maintainer: Simona Aufiero <[email protected]> |
| 640275ce | Description: R-based computational framework for a comprehensive in silico |
| c1a8209a | analysis of circRNAs. This computational framework allows to combine and
analyze circRNAs previously detected by multiple publicly available
annotation-based circRNA detection tools. It covers different aspects of
circRNAs analysis from differential expression analysis, evolutionary
conservation, biogenesis to functional analysis.
|
| 5615c25d | License: GPL-3 Encoding: UTF-8 |
| 4396a9c9 | biocViews: Annotation, StructuralPrediction, FunctionalPrediction, GenePrediction,
GenomeAssembly, DifferentialExpression
|
| e54404c1 | Depends: |
| 0e1b5345 | R(>= 4.5.0) |
| f609054a | RoxygenNote: 7.2.3 |
| 77c5894c | Suggests:
testthat,
|
| 5615c25d | knitr,
roxygen2,
rmarkdown,
devtools,
gridExtra,
|
| 590cd886 | ggpubr, |
| 77c5894c | VennDiagram,
BSgenome.Mmusculus.UCSC.mm9,
BSgenome.Hsapiens.UCSC.hg38,
BSgenome.Mmusculus.UCSC.mm10,
|
| bc7ea11f | BiocManager, |
| 5615c25d | Imports:
dplyr,
magrittr,
readr,
rtracklayer,
stringr,
stringi,
DESeq2,
edgeR,
GenomicRanges,
IRanges,
seqinr,
R.utils,
reshape2,
ggplot2,
utils,
rlang,
S4Vectors,
stats,
GenomeInfoDb,
|
| 836cb550 | universalmotif, |
| bc7ea11f | AnnotationHub,
BSgenome.Hsapiens.UCSC.hg19,
|
| 1e25a641 | Biostrings, |
| c1a22e6b | gwascat, |
| 1e25a641 | BSgenome, |
| e54404c1 | VignetteBuilder:
knitr
|
| f0adb651 | URL:
https://github.com/Aufiero/circRNAprofiler
BugReports:
https://github.com/Aufiero/circRNAprofiler/issues
|