# Version 1.0.0 (Oct 29, 2019)

 -   First release on bioconductor

 # Version 1.1.2 (development version) (Dic 15, 2019)

 
 -   Improved vignettes
 
 -   In plotMotifs function:
 
     -   To avoid infinity as a value for fold change, 1 was added to
         number of occurences of each motif found in the foreground and
         background target sequences before the normalization.
 
     -   Added angle param for the rotation angle of the axis labels.

     -   Added removeNegLog2FC param to remove the RBPs having a negative
         log2FC.
 
 -   volcanoPlot function:
 
     -   Added geneSet param that allows to show only specified host gene
         names.
 
 -   In getMotifs function:
 
     -   Included possibilities to use motifs of RBPs from MEME database

 # Version 1.1.3 (development version) (Dic 19, 2019)

 
 -   In plotMotifs function:
     -   Added n param for filtering the motifs.

 # Version 1.1.4 (development version) (Jen 08, 2020)

 
 -   In getMotifs function:
     -   Fixed a bug when trimming the BSJ sequences. E.g. by setting
         width = 6, the BSJ sequences are trimmed so that only 5
         nucleotides are left at each side of the BSJ. If width = 7, then
         6 nucleotides are left at each side of the BSJ etc.
 

 # Version 1.1.5 (development version) (Jen 09, 2020)

 
 -   In plotMotifs function:
     -   Before only motifs found in the foreground sequences were
         reported. Now also motifs found in the background are reported
         in the output.

 # Version 1.1.14 (development version) (Jen 09, 2020)

 
 -   In mergeBSJunctions function:
     -   Since different detection tools can report sligtly different
         coordinates before grouping the back-spliced junctions, it is

         now possible to fix the latter using the gtf file. See param

         fixBSJsWithGTF.

 # Version 1.2.0 (April 27, 2020)

 -   Second release on bioconductor

 # Version 1.3.1 (development version)

 -   Added files to fix bugs
 

 # Version 1.4.0 (October 27, 2020)

 
 -   Third release on bioconductor
 

 # Version 1.5.3 (development version)
 
 -   Removed citr package from DESCRIPTION

 
 # Version 1.8.0 (October 27, 2021)
 
 -   Fifth release on bioconductor

 
 # Version 1.15.2 (October 10, 2023)
 
 -   Possibility to use a maximum of 3 unsupported/‘other’ tools.

 
 # Version 1.15.3 (October 24, 2023)
 
 -   Fixed bug due to dplyr::bind\_rows()