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# Version 1.0.0 (Oct 29, 2019)

*   First release on bioconductor

# Version 1.1.2 (development version) (Dic 15, 2019)

*   Improved vignettes

*   In plotMotifs function:

    +  To avoid infinity as a value for fold change, 1 was added to number of occurences
of each motif found in the foreground and background target sequences before 
the normalization.

    + Added angle param for the rotation angle of the axis labels.
    + Added removeNegLog2FC param to remove the RBPs having a negative log2FC.


*   volcanoPlot function:

    +   Added geneSet param that allows to show only specified host gene names.


*   In getMotifs function:

    +   Included possibilities to use motifs of RBPs from MEME database

# Version 1.1.3 (development version) (Dic 19, 2019)

*   In plotMotifs function:
    + Added n param for filtering the motifs.


# Version 1.1.4 (development version) (Jen 08, 2020)

*   In getMotifs function:
    + Fixed a bug when trimming the BSJ sequences. E.g. by setting width = 6,
    the BSJ sequences are trimmed so that only 5 nucleotides are left at each 
    side of the BSJ. If width = 7, then 6 nucleotides are left at each side of
    the BSJ etc.
    
# Version 1.1.5 (development version) (Jen 09, 2020)

*   In plotMotifs function:
    + Before only motifs found in the foreground sequences were reported. Now also
     motifs found in the background are reported in the output.


# Version 1.1.14 (development version) (Jen 09, 2020)

*   In mergeBSJunctions function:
    + Since different detection tools can report sligtly different coordinates
    before grouping the back-spliced junctions, it is now possible to fix the 
    latter using the gtf file. See param fixBSJsWithGTF.
    
# Version 1.2.0 (April 27, 2020)

*   Second release on bioconductor    

# Version 1.3.1 (development version)

*   Added files to fix bugs


# Version 1.4.0 (October 27, 2020)

*   Third release on bioconductor


# Version 1.5.3 (development version)

*   Removed citr package from DESCRIPTION


# Version 1.8.0 (October 27, 2021)

*   Fifth release on bioconductor

# Version 1.15.2 (October 10, 2023)

*   Possibility to use a maximum of 3 unsupported/‘other’ tools.

# Version 1.15.3 (October 24, 2023)

*   Fixed bug due to dplyr::bind_rows()