| b348c6e8 |
# Generated by roxygen2: do not edit by hand
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| 7b13daf6 |
export(buildClusterTree)
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| f26fa696 |
export(clr)
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| de95d1b2 |
export(clrInv)
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| b348c6e8 |
export(crumblr)
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| b656a528 |
export(diffTree)
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| 2462c738 |
export(dmn_mle)
export(logFrac)
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| c71db33d |
export(meanSdPlot)
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export(plotForest)
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export(plotScatterDensity)
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export(plotTreeTest)
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export(plotTreeTestBeta)
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export(standardize)
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export(treeTest)
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exportMethods(plotForest)
exportMethods(standardize)
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import(ggplot2)
importFrom(MASS,kde2d)
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| 8efd39ff |
importFrom(Rdpack,reprompt)
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importFrom(Rfast,Digamma)
importFrom(Rfast,Lgamma)
importFrom(Rfast,colmeans)
importFrom(Rfast,rowsums)
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| 7b13daf6 |
importFrom(SingleCellExperiment,colData)
importFrom(SingleCellExperiment,reducedDim)
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| 2462c738 |
importFrom(dplyr,`%>%`)
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| b656a528 |
importFrom(dplyr,bind_rows)
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| 2462c738 |
importFrom(dplyr,filter)
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importFrom(dplyr,inner_join)
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importFrom(dplyr,pull)
importFrom(dplyr,tibble)
importFrom(ggplot2,element_text)
importFrom(ggplot2,scale_color_gradient2)
importFrom(ggplot2,scale_size_area)
importFrom(ggplot2,theme)
importFrom(ggtree,geom_point2)
importFrom(ggtree,geom_text2)
importFrom(ggtree,geom_tiplab)
importFrom(ggtree,get_taxa_name)
importFrom(ggtree,ggtree)
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| b348c6e8 |
importFrom(methods,new)
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| cb5033c4 |
importFrom(stats,as.dist)
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| 7b13daf6 |
importFrom(stats,dist)
importFrom(stats,hclust)
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importFrom(stats,optim)
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| 9d24b64a |
importFrom(stats,optimize)
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importFrom(stats,p.adjust)
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importFrom(stats,quantile)
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| c71db33d |
importFrom(stats,sd)
importFrom(stats,var)
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| 2462c738 |
importFrom(tidytree,as.phylo)
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importFrom(tidytree,as.treedata)
importFrom(tidytree,as_tibble)
importFrom(tidytree,left_join)
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| 2462c738 |
importFrom(tidytree,offspring)
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| 7b13daf6 |
importFrom(variancePartition,mvTest)
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| c71db33d |
importFrom(viridis,scale_color_viridis)
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