| cd5a78e7 |
# Generated by roxygen2: do not edit by hand
|
| 0d8638d8 |
export("channelNames<-")
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| 47dd71e2 |
export("setChannels<-")
export("setImages<-")
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| 66ad61f6 |
export(CytoImageList)
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| 0d8638d8 |
export(channelNames)
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| c882e55a |
export(compImage)
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| b32aec7a |
export(cytomapperShiny)
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| 47dd71e2 |
export(getChannels)
export(getImages)
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| 0d8638d8 |
export(loadImages)
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| 88f1dbd5 |
export(measureObjects)
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| 8c5e5ec4 |
export(mergeChannels)
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| 0d8638d8 |
export(plotCells)
export(plotPixels)
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| 5ebdf71b |
export(scaleImages)
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| 66ad61f6 |
exportClasses(CytoImageList)
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| 7a7e0058 |
exportMethods("[<-")
exportMethods("[[<-")
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| 0d8638d8 |
exportMethods("channelNames<-")
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| 7a7e0058 |
exportMethods("names<-")
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| 47dd71e2 |
exportMethods("setChannels<-")
exportMethods("setImages<-")
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| 0d8638d8 |
exportMethods(channelNames)
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| 7a7e0058 |
exportMethods(coerce)
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| 47dd71e2 |
exportMethods(getChannels)
exportMethods(getImages)
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| 95781f7f |
exportMethods(names)
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| 56e32bff |
exportMethods(normalize)
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| 5ebdf71b |
exportMethods(scaleImages)
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| 7a7e0058 |
exportMethods(show)
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| 95781f7f |
import(SingleCellExperiment)
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| 0e2cae8f |
import(ggplot2)
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| 7a7e0058 |
import(methods)
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| 0e2cae8f |
import(shiny)
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| 499b6828 |
import(shinydashboard)
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| 2755feaf |
importClassesFrom(DelayedArray,DelayedArray)
importClassesFrom(HDF5Array,HDF5Array)
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| cd5a78e7 |
importClassesFrom(S4Vectors,SimpleList)
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| 88f1dbd5 |
importClassesFrom(SingleCellExperiment,SingleCellExperiment)
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| 2755feaf |
importFrom(BiocParallel,MulticoreParam)
|
| 7069ae22 |
importFrom(BiocParallel,SerialParam)
importFrom(BiocParallel,bplapply)
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| 88f1dbd5 |
importFrom(BiocParallel,bpmapply)
|
| 2755feaf |
importFrom(DelayedArray,DelayedArray)
|
| be99e127 |
importFrom(DelayedArray,path)
importFrom(DelayedArray,seed)
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| 02028c54 |
importFrom(EBImage,"imageData<-")
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| cd5a78e7 |
importFrom(EBImage,Image)
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| 7a7e0058 |
importFrom(EBImage,abind)
importFrom(EBImage,colorMode)
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| 08a8eb0a |
importFrom(EBImage,combine)
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| 88f1dbd5 |
importFrom(EBImage,computeFeatures.basic)
importFrom(EBImage,computeFeatures.haralick)
importFrom(EBImage,computeFeatures.moment)
importFrom(EBImage,computeFeatures.shape)
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| 2755feaf |
importFrom(EBImage,imageData)
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| 39d6487d |
importFrom(EBImage,normalize)
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| 985521d2 |
importFrom(EBImage,numberOfFrames)
importFrom(EBImage,paintObjects)
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| c4d5f777 |
importFrom(EBImage,readImage)
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| 72b8c170 |
importFrom(HDF5Array,HDF5Array)
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| 2755feaf |
importFrom(HDF5Array,writeHDF5Array)
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| e8fcaad7 |
importFrom(RColorBrewer,brewer.pal)
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| 2755feaf |
importFrom(S4Vectors,"mcols<-")
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| 88f1dbd5 |
importFrom(S4Vectors,DataFrame)
|
| 985521d2 |
importFrom(S4Vectors,SimpleList)
|
| 0d8638d8 |
importFrom(S4Vectors,endoapply)
|
| 985521d2 |
importFrom(S4Vectors,isEmpty)
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| e8fcaad7 |
importFrom(S4Vectors,mcols)
|
| 47dd71e2 |
importFrom(S4Vectors,mendoapply)
|
| 48931939 |
importFrom(S4Vectors,metadata)
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| 0d8638d8 |
importFrom(S4Vectors,new2)
importFrom(S4Vectors,setValidity2)
|
| 2112b7d4 |
importFrom(SingleCellExperiment,int_metadata)
importFrom(SpatialExperiment,"spatialCoords<-")
importFrom(SpatialExperiment,SpatialExperiment)
|
| 883fb0d2 |
importFrom(SummarizedExperiment,"assayNames<-")
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| 88f1dbd5 |
importFrom(SummarizedExperiment,"colData<-")
|
| 48931939 |
importFrom(SummarizedExperiment,"metadata<-")
|
| 985521d2 |
importFrom(SummarizedExperiment,assay)
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| e8fcaad7 |
importFrom(SummarizedExperiment,assayNames)
|
| 48931939 |
importFrom(ggbeeswarm,geom_quasirandom)
|
| e8fcaad7 |
importFrom(grDevices,col2rgb)
importFrom(grDevices,colorRampPalette)
|
| 8c3000dc |
importFrom(grDevices,dev.off)
importFrom(grDevices,jpeg)
importFrom(grDevices,png)
|
| d5ffdf02 |
importFrom(grDevices,recordPlot)
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| e8fcaad7 |
importFrom(grDevices,rgb)
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| 8c3000dc |
importFrom(grDevices,tiff)
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| 985521d2 |
importFrom(graphics,legend)
importFrom(graphics,par)
importFrom(graphics,rasterImage)
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| bdaee09f |
importFrom(graphics,rect)
|
| 985521d2 |
importFrom(graphics,strheight)
importFrom(graphics,strwidth)
importFrom(graphics,text)
|
| 48931939 |
importFrom(matrixStats,rowRanges)
|
| 7a7e0058 |
importFrom(methods,as)
importFrom(methods,callNextMethod)
|
| 47dd71e2 |
importFrom(methods,is)
|
| 7a7e0058 |
importFrom(methods,validObject)
|
| c882e55a |
importFrom(nnls,nnls)
|
| 985521d2 |
importFrom(raster,as.raster)
|
| c766f65c |
importFrom(rhdf5,h5delete)
importFrom(rhdf5,h5ls)
|
| 8c3000dc |
importFrom(stats,quantile)
|
| 48931939 |
importFrom(svgPanZoom,renderSvgPanZoom)
importFrom(svgPanZoom,svgPanZoom)
importFrom(svgPanZoom,svgPanZoomOutput)
|
| 8e528d91 |
importFrom(svglite,stringSVG)
|
| cd5a78e7 |
importFrom(tools,file_ext)
|
| 6eeb26d2 |
importFrom(tools,file_path_sans_ext)
|
| 48931939 |
importFrom(utils,capture.output)
|
| cd5a78e7 |
importFrom(utils,packageVersion)
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| 48931939 |
importFrom(utils,sessionInfo)
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| 7012287b |
importFrom(viridis,inferno)
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| e8fcaad7 |
importFrom(viridis,viridis)
|
