@@ -1,6 +1,6 @@

 Package: easylift

 Title: An R package to perform genomic liftover

-Version: 0.0.3

+Version: 0.0.4

 Date: 2023-08-05

 Authors@R: 

     c(

@@ -52,7 +52,7 @@ easylift(gr, to, chain)

 To cite package ‘easylift’ in publications use:

   Al Nahid A, Love M (2023). _easylift: An R package to perform

-  genomic liftOver_. R package version 0.0.3,

+  genomic liftover_. R package version 0.0.4,

   <https://github.com/nahid18/easylift>.

@@ -60,10 +60,10 @@ A BibTeX entry for LaTeX users is

 ```

   @Manual{,

-    title = {easylift: An R package to perform genomic liftOver},

+    title = {easylift: An R package to perform genomic liftover},

     author = {Abdullah Al Nahid and Michael Love},

     year = {2023},

-    note = {R package version 0.0.3},

+    note = {R package version 0.0.4},

     url = {https://github.com/nahid18/easylift},

   }

 ```

@@ -47,16 +47,16 @@ easylift(gr, to, chain)

 To cite package ‘easylift’ in publications use:

 Al Nahid A, Love M (2023). *easylift: An R package to perform genomic

-liftOver*. R package version 0.0.3,

+liftover*. R package version 0.0.4,

 <https://github.com/nahid18/easylift>.

 A BibTeX entry for LaTeX users is

       @Manual{,

-        title = {easylift: An R package to perform genomic liftOver},

+        title = {easylift: An R package to perform genomic liftover},

         author = {Abdullah Al Nahid and Michael Love},

         year = {2023},

-        note = {R package version 0.0.3},

+        note = {R package version 0.0.4},

         url = {https://github.com/nahid18/easylift},

       }

@@ -1,2 +1,3 @@

 *.html

 *.R

+*.pdf

\ No newline at end of file

@@ -1,23 +1,21 @@

 ---

-title: "Introduction to easylift package"

+title: "Introduction to easylift"

 abstract: >

-  An R package to perform genomic liftover between different genome assemblies with `GRanges` and `chain` file. Source Code: https://github.com/nahid18/easylift

+  An R/Bioconductor library to perform genomic liftover between different genome assemblies with `GRanges` and `chain` file. Source Code: https://github.com/nahid18/easylift

 author:

-- name: Abdullah Al Nahid

-  affiliation: 

-  - Department of Biochemistry and Molecular Biology, Shahjalal University of Science and Technology, Sylhet-3114, Bangladesh

-- name: Michael I. Love

-  affiliation: 

-  - Biostatistics Department, University of North Carolina-Chapel Hill, Chapel Hill, NC, USA

-  - Genetics Department, University of North Carolina-Chapel Hill, Chapel Hill, NC, USA

-  email: [email protected]

-output: 

-  BiocStyle::html_document:

+- Abdullah Al Nahid^[Department of Biochemistry and Molecular Biology, Shahjalal University of Science and Technology, Sylhet-3114, Bangladesh]

+- Michael I. Love^[Biostatistics Department, University of North Carolina-Chapel Hill, Chapel Hill, NC, USA, Genetics Department, University of North Carolina-Chapel Hill, Chapel Hill, NC, USA]

+date: "`r format(Sys.time(), '%d %B %Y')`"

+output:

+  pdf_document:

+    toc: true

+    toc_depth: 2

+    latex_engine: xelatex

+  html_document:

     self_contained: yes

     toc: true

     toc_float: true

     toc_depth: 2

-    code_folding: show

 vignette: >

   %\VignetteIndexEntry{easylift}

   %\VignetteEngine{knitr::rmarkdown}

@@ -86,17 +84,17 @@ gr |> easylift("hg38")

 To cite package ‘easylift’ in publications use:

   Al Nahid A, Love M (2023). _easylift: An R package to perform

-  genomic liftOver_. R package version 0.0.3,

+  genomic liftover_. R package version 0.0.4,

   https://github.com/nahid18/easylift.

 A BibTeX entry for LaTeX users is

 ```

   @Manual{,

-    title = {easylift: An R package to perform genomic liftOver},

+    title = {easylift: An R package to perform genomic liftover},

     author = {Abdullah Al Nahid and Michael Love},

     year = {2023},

-    note = {R package version 0.0.3},

+    note = {R package version 0.0.4},

     url = {https://github.com/nahid18/easylift},

   }

 ```