1. epistasisGA
  2. man
  3. case.gxe.Rd
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Preparing to merge in with original epistasisGA package.

mnodzenski authored on 22/11/2022 18:45:46
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man/case.gxe.Rd
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@@ -6,12 +6,25 @@
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 \title{Genotypes for the cases of case-parent triads with a simulated gene
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 environment interaction.}
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 \format{
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+A data frame with 1000 rows and 24 variables
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+
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 A data frame with 1000 rows and 24 variables
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 }
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 \usage{
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+data(case.gxe)
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+
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 data(case.gxe)
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 }
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 \description{
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+A simulated dataset containing the counts of the alternate allele
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+for 24 SNPs for the cases in 1000 simulated case-parent
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+triads. Columns represent SNPs, rows are individuals. SNPs
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+in columns 6, 12, and 18 represent a simulated risk pathway,
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+where, in the child, at least one copy of the alternate allele
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+for each path SNP in addition to exposure 1 confers increased
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+disease risk.
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+.
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+
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 A simulated dataset containing the counts of the alternate allele
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 for 24 SNPs for the cases in 1000 simulated case-parent
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 triads. Columns represent SNPs, rows are individuals. SNPs
Browse code

Adding in E-GADGETS vignette and fixing the on-off switch for the family-based E-GADGET component

mnodzenski authored on 26/10/2022 17:04:35
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man/case.gxe.Rd
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@@ -6,18 +6,19 @@
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 \title{Genotypes for the cases of case-parent triads with a simulated gene
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 environment interaction.}
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 \format{
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-A data frame with 1000 rows and 100 variables
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+A data frame with 1000 rows and 24 variables
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 }
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 \usage{
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 data(case.gxe)
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 }
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 \description{
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 A simulated dataset containing the counts of the alternate allele
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-for 100 SNPs for the cases in 1000 simulated case-parent
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+for 24 SNPs for the cases in 1000 simulated case-parent
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 triads. Columns represent SNPs, rows are individuals. SNPs
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-in columns 25, 50, and 75 represent a simulated risk pathway,
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-where at least one copy of the alternate allele for each path SNP
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-in addition to exposure 2 confers increased disease risk.
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+in columns 6, 12, and 18 represent a simulated risk pathway,
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+where, in the child, at least one copy of the alternate allele
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+for each path SNP in addition to exposure 1 confers increased
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+disease risk.
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 .
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 }
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 \keyword{datasets}
Browse code

Add GxE data to package.

mnodzenski authored on 02/07/2021 19:39:55
Showing 1 changed files
man/case.gxe.Rd
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+% Generated by roxygen2: do not edit by hand
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+% Please edit documentation in R/data.R
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+\docType{data}
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+\name{case.gxe}
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+\alias{case.gxe}
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+\title{Genotypes for the cases of case-parent triads with a simulated gene
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+environment interaction.}
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+\format{
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+A data frame with 1000 rows and 100 variables
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+}
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+\usage{
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+data(case.gxe)
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+}
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+\description{
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+A simulated dataset containing the counts of the alternate allele
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+for 100 SNPs for the cases in 1000 simulated case-parent
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+triads. Columns represent SNPs, rows are individuals. SNPs
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+in columns 25, 50, and 75 represent a simulated risk pathway,
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+where at least one copy of the alternate allele for each path SNP
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+in addition to exposure 2 confers increased disease risk.
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+.
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+}
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+\keyword{datasets}