@@ -167,4 +167,7 @@

  - Made sure the package passes BUILD and CHECK with no internet connection.

  - Correction in vignette: using yeast genome for `topGO`, instead of human (somehow it was not applied in 1.0.5).

+## Version 1.2.1

+

+ - Go term namespace added to the information extracted by `fetch_go`.

@@ -99,16 +99,17 @@ parse_obo_file <- function(obo) {

 #' @noRd

 extract_obo_terms <- function(parsed) {

   # Binding variables from non-standard evaluation locally

-  key <- term_id <- value <- term_name <- NULL

+  key <- term_id <- value <- name <- term_name <- namespace <- NULL

   terms <- parsed |>

-    dplyr::filter(key == "name") |>

-    dplyr::select(term_id, term_name = value)

+    dplyr::filter(key %in% c("name", "namespace")) |>

+    tidyr::pivot_wider(id_cols = term_id, names_from = key, values_from = value) |>

+    dplyr::rename(term_name = name)

   alt_terms <- parsed |>

     dplyr::filter(key == "alt_id") |>

     dplyr::left_join(terms, by = "term_id") |>

-    dplyr::select(term_id = value, term_name)

+    dplyr::select(term_id = value, term_name, namespace)

   dplyr::bind_rows(

     terms,

@@ -9,16 +9,9 @@ test_that("Incorrect species in fetch_go", {

   expect_error(fetch_go(species = "not a species"))

 })

-

-test_that("Incorrect mart in fetch_go", {

-  expect_error(fetch_go(mart = 1))

-  expect_error(fetch_go(mart = "mart"))

-})

-

-

 test_that("Incorrect dataset triggers error", {

   expect_error(fetch_go(dataset = "not a dataset"))

-  expect_error(fetch_go_from_bm(dataset = "not a dataset"))

+  expect_error(fetch_go_from_bm(dataset = "not a dataset", use_cache = FALSE, on_error = "stop"))

 })

 test_that("Processing OBO file", {