Package: gcatest
 Title: Genotype Conditional Association TEST

 Version: 2.9.0

 Authors@R: c(
     person(given = "Wei",
 	   family = "Hao",
 	   role = "aut",
 	   email = "[email protected]"),
     person(given = "Minsun",
 	   family = "Song",
 	   role = "aut"),
     person(given = "Alejandro",
 	   family = "Ochoa",
 	   role = c("aut", "cre"),
 	   email = "[email protected]",
            comment = c(ORCID = "0000-0003-4928-3403")),
     person(given = "John D.",
            family = "Storey",
 	   role = "aut",
 	   email = "[email protected]",
            comment = c(ORCID = "0000-0001-5992-402X"))
     )

 Encoding: UTF-8

 LazyData: true

 Description: GCAT is an association test for genome wide association studies that controls for population structure under a general class of trait models.  This test conditions on the trait, which makes it immune to confounding by unmodeled environmental factors.  Population structure is modeled via logistic factors, which are estimated using the `lfa` package.

 Imports:

     methods,

     lfa
 Depends:

     R (>= 4.0)

 Suggests:
     knitr,

     ggplot2,
     testthat,
     BEDMatrix,
     genio

 VignetteBuilder: knitr

 License: GPL (>= 3)

 biocViews: SNP, DimensionReduction, PrincipalComponent, GenomeWideAssociation
 BugReports: https://github.com/StoreyLab/gcatest/issues
 URL: https://github.com/StoreyLab/gcatest

 Roxygen: list(markdown = TRUE)

 RoxygenNote: 7.2.3