| Name | Mode | Size |
|---|---|---|
| .. | ||
| alias2Symbol.R | 100644 | 5 kb |
| arrayWeights.R | 100644 | 3 kb |
| arrayWeightsGeneByGene.R | 100644 | 2 kb |
| arrayWeightsPrWtsREML.R | 100644 | 3 kb |
| arrayWeightsQuick.R | 100644 | 0 kb |
| arrayWeightsREML.R | 100644 | 3 kb |
| auROC.R | 100755 | 1 kb |
| avearrays.R | 100644 | 2 kb |
| background-kooperberg.R | 100755 | 7 kb |
| background-normexp.R | 100644 | 6 kb |
| background.R | 100755 | 4 kb |
| barcodeplot.R | 100644 | 12 kb |
| beadCountWeights.R | 100644 | 4 kb |
| bwss.R | 100644 | 3 kb |
| chooseLowessSpan.R | 100644 | 0 kb |
| classes.R | 100755 | 8 kb |
| combine.R | 100644 | 7 kb |
| contrastAsCoef.R | 100644 | 1 kb |
| contrasts.R | 100644 | 5 kb |
| convest.R | 100644 | 3 kb |
| coolmap.R | 100644 | 3 kb |
| cumOverlap.R | 100644 | 1 kb |
| decidetests.R | 100755 | 9 kb |
| detectionPValues.R | 100644 | 1 kb |
| diffSplice.R | 100644 | 6 kb |
| dups.R | 100755 | 9 kb |
| ebayes.R | 100755 | 6 kb |
| fitFDist.R | 100644 | 5 kb |
| fitFDistRobustly.R | 100644 | 8 kb |
| fitFDistUnequalDF1.R | 100644 | 5 kb |
| fitGammaIntercept.R | 100644 | 1 kb |
| fitmixture.R | 100644 | 1 kb |
| genas.R | 100644 | 7 kb |
| geneset-camera.R | 100644 | 6 kb |
| geneset-cameraPR.R | 100644 | 3 kb |
| geneset-fry.R | 100644 | 7 kb |
| geneset-ids2indices.R | 100644 | 1 kb |
| geneset-roast.R | 100644 | 16 kb |
| geneset-romer.R | 100644 | 9 kb |
| geneset-wilcox.R | 100644 | 2 kb |
| goana.R | 100644 | 12 kb |
| goanaTrend.R | 100644 | 1 kb |
| kegga.R | 100644 | 14 kb |
| lmEffects.R | 100644 | 5 kb |
| lmfit.R | 100644 | 18 kb |
| loessFit.R | 100644 | 3 kb |
| logsumexp.R | 100644 | 1 kb |
| mergeScans.R | 100644 | 8 kb |
| modelmatrix.R | 100755 | 4 kb |
| neqc.R | 100644 | 5 kb |
| norm.R | 100755 | 19 kb |
| plotExonJunc.R | 100644 | 6 kb |
| plotExons.R | 100644 | 3 kb |
| plotFB.R | 100644 | 1 kb |
| plotMD.R | 100644 | 5 kb |
| plotMDS.R | 100644 | 5 kb |
| plotSplice.R | 100644 | 2 kb |
| plotWithHighlights.R | 100644 | 4 kb |
| plotdensities.R | 100755 | 3 kb |
| plotlines.R | 100644 | 1 kb |
| plotrldf.R | 100644 | 5 kb |
| plots-fit.R | 100755 | 9 kb |
| plots-image.R | 100755 | 3 kb |
| plots-ma.R | 100755 | 6 kb |
| poolvar.R | 100755 | 0 kb |
| predFCm.R | 100644 | 2 kb |
| printtipWeights.R | 100755 | 7 kb |
| propTrueNull.R | 100644 | 2 kb |
| propexpr.R | 100644 | 1 kb |
| qqt.R | 100644 | 1 kb |
| rankSumTestWithCorrelation.R | 100644 | 1 kb |
| read-ilmn.R | 100644 | 4 kb |
| read-imagene.R | 100644 | 4 kb |
| read-maimages.R | 100644 | 14 kb |
| read.R | 100755 | 14 kb |
| read.idat.R | 100644 | 5 kb |
| readHeader.R | 100644 | 5 kb |
| removeBatchEffect.R | 100644 | 2 kb |
| sampleInfoFromGEO.R | 100644 | 3 kb |
| selmod.R | 100644 | 2 kb |
| sepchannel.R | 100755 | 6 kb |
| squeezeVar.R | 100644 | 2 kb |
| subsetting.R | 100755 | 6 kb |
| topSplice.R | 100644 | 2 kb |
| topTableF.R | 100644 | 2 kb |
| toptable.R | 100644 | 8 kb |
| treat.R | 100644 | 3 kb |
| tricubeMovingAverage.R | 100644 | 1 kb |
| utility.R | 100755 | 5 kb |
| venn.R | 100755 | 15 kb |
| voom.R | 100644 | 4 kb |
| voomWithQualityWeights.R | 100644 | 2 kb |
| vooma.R | 100644 | 6 kb |
| voomaLmFit.R | 100644 | 7 kb |
| weightedLowess.R | 100644 | 2 kb |
| weightedmedian.R | 100644 | 1 kb |
| weights.R | 100644 | 3 kb |
| write.R | 100755 | 3 kb |
| wsva.R | 100644 | 1 kb |
| zscore.R | 100755 | 4 kb |
| zscoreHyper.R | 100644 | 1 kb |
| zzz.R | 100755 | 1 kb |