... | ... |
@@ -1,7 +1,7 @@ |
1 | 1 |
Package: lisaClust |
2 | 2 |
Type: Package |
3 | 3 |
Title: lisaClust: Clustering of Local Indicators of Spatial Association |
4 |
-Version: 1.8.1 |
|
4 |
+Version: 1.8.2 |
|
5 | 5 |
Authors@R: c( |
6 | 6 |
person("Ellis", "Patrick", email = "[email protected]", |
7 | 7 |
role = c("aut", "cre")), |
... | ... |
@@ -20,9 +20,27 @@ Depends: R (>= 4.0) |
20 | 20 |
VignetteBuilder: knitr |
21 | 21 |
BugReports: https://github.com/ellispatrick/lisaClust/issues |
22 | 22 |
URL: https://ellispatrick.github.io/lisaClust/, https://github.com/ellispatrick/lisaClust |
23 |
-Imports: ggplot2, class, concaveman, grid, BiocParallel, spatstat.explore, |
|
24 |
- spatstat.geom, BiocGenerics, S4Vectors, methods, spicyR, |
|
25 |
- purrr, stats, data.table, dplyr, tidyr, SingleCellExperiment, SpatialExperiment, |
|
26 |
- SummarizedExperiment, pheatmap |
|
23 |
+Imports: |
|
24 |
+ ggplot2, |
|
25 |
+ class, |
|
26 |
+ concaveman, |
|
27 |
+ grid, |
|
28 |
+ BiocParallel, |
|
29 |
+ spatstat.explore, |
|
30 |
+ spatstat.geom, |
|
31 |
+ BiocGenerics, |
|
32 |
+ S4Vectors, |
|
33 |
+ methods, |
|
34 |
+ spicyR, |
|
35 |
+ purrr, |
|
36 |
+ stats, |
|
37 |
+ data.table, |
|
38 |
+ dplyr, |
|
39 |
+ tidyr, |
|
40 |
+ SingleCellExperiment, |
|
41 |
+ SpatialExperiment, |
|
42 |
+ SummarizedExperiment, |
|
43 |
+ pheatmap, |
|
44 |
+ spatstat.random |
|
27 | 45 |
Suggests: BiocStyle, knitr, rmarkdown |
28 | 46 |
RoxygenNote: 7.2.3 |
... | ... |
@@ -65,6 +65,7 @@ importFrom(spatstat.geom,owin) |
65 | 65 |
importFrom(spatstat.geom,ppp) |
66 | 66 |
importFrom(spatstat.geom,solapply) |
67 | 67 |
importFrom(spatstat.geom,union.owin) |
68 |
+importFrom(spatstat.random,expand.owin) |
|
68 | 69 |
importFrom(spicyR,"cellAnnotation<-") |
69 | 70 |
importFrom(spicyR,SegmentedCells) |
70 | 71 |
importFrom(spicyR,cellAnnotation) |
... | ... |
@@ -367,6 +367,7 @@ weightCounts <- function(dt, X, maxD, lam) { |
367 | 367 |
#' @rdname inhomLocalK |
368 | 368 |
#' @importFrom spatstat.geom ppp closepairs marks area |
369 | 369 |
#' @importFrom spatstat.explore density.ppp |
370 |
+#' @importFrom spatstat.random expand.owin |
|
370 | 371 |
#' @importFrom tidyr pivot_longer |
371 | 372 |
#' @importFrom dplyr left_join |
372 | 373 |
inhomLocalK <- |
... | ... |
@@ -379,6 +380,7 @@ inhomLocalK <- |
379 | 380 |
lisaFunc = "K") { |
380 | 381 |
|
381 | 382 |
ow <- makeWindow(data, window, window.length) |
383 |
+ ow <- spatstat.random::expand.owin(ow, distance = 0.01) |
|
382 | 384 |
X <- |
383 | 385 |
spatstat.geom::ppp( |
384 | 386 |
x = data$x, |