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# miloR
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R package implementation of milo for testing differentially abundant neighbourhoods
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+Format: 
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[](https://travis-ci.com/MikeDMorgan/miloR)
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[](https://codecov.io/gh/MikeDMorgan/miloR)
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-To install `miloR` directly from GitHub:
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-```devtools::install_github("MikeDMorgan/miloR") ```
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+---
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+### Installation
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-For questions please create a new issue in this repository.
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+```
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+## Install development version
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+devtools::install_github("MikeDMorgan/miloR")
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+```
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Examples on how to use `miloR` can be found in the [vignettes directory](https://github.com/MikeDMorgan/miloR/tree/master/vignettes).
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+---
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### Example work flow
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An example of the `Milo` work flow to get started:
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milo.res <- testNhoods(milo.obj, design=~Condition, design.df=milo.design)
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head(milo.res)
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```
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+---
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+### Support
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+For any question or bug report please create a new issue in this repository.
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