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fix gastrulation vignette?

MikeDMorgan authored on 29/04/2024 16:50:30
Showing 2 changed files

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@@ -4,7 +4,7 @@
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 #' as representative neighbourhoods on a nearest neighbour graph. Hypothesis testing is performed using a
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 #' negative bionomial generalized linear model.
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 #'
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-#' @aliases miloR-package
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+#' @aliases miloR
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 #' @importFrom Rcpp evalCpp
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 #' @useDynLib miloR
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 #' @name miloR
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@@ -328,7 +328,7 @@ In these examples we settle for `overlap=5` and `max.lfc.delta=5`, as we need at
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 ```{r, dev="jpeg"}
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 set.seed(42)
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-da_results <- groupNhoods(embryo_milo, da_results, max.lfc.delta = 1, overlap=3)
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+da_results <- groupNhoods(embryo_milo, da_results, max.lfc.delta = 10, overlap=1)
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 plotNhoodGroups(embryo_milo, da_results, layout="umap")
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 plotDAbeeswarm(da_results, group.by = "NhoodGroup")
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 ```