... | ... |
@@ -4,7 +4,7 @@ |
4 | 4 |
#' as representative neighbourhoods on a nearest neighbour graph. Hypothesis testing is performed using a |
5 | 5 |
#' negative bionomial generalized linear model. |
6 | 6 |
#' |
7 |
-#' @aliases miloR-package |
|
7 |
+#' @aliases miloR |
|
8 | 8 |
#' @importFrom Rcpp evalCpp |
9 | 9 |
#' @useDynLib miloR |
10 | 10 |
#' @name miloR |
... | ... |
@@ -328,7 +328,7 @@ In these examples we settle for `overlap=5` and `max.lfc.delta=5`, as we need at |
328 | 328 |
|
329 | 329 |
```{r, dev="jpeg"} |
330 | 330 |
set.seed(42) |
331 |
-da_results <- groupNhoods(embryo_milo, da_results, max.lfc.delta = 1, overlap=3) |
|
331 |
+da_results <- groupNhoods(embryo_milo, da_results, max.lfc.delta = 10, overlap=1) |
|
332 | 332 |
plotNhoodGroups(embryo_milo, da_results, layout="umap") |
333 | 333 |
plotDAbeeswarm(da_results, group.by = "NhoodGroup") |
334 | 334 |
``` |