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@@ -4,30 +4,59 @@ Title: Interactive Visualization of RNA-seq Data Using a Principal Components Ap
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Version: 2.9.4
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Date: 2018-11-21
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Authors@R: c(person("Federico", "Marini", role = c("aut", "cre"),
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- email ="[email protected]",
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- comment = c(ORCID = '0000-0003-3252-7758')))
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+ email ="[email protected]",
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+ comment = c(ORCID = '0000-0003-3252-7758')))
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Maintainer: Federico Marini <[email protected]>
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-Description: This package provides functionality for interactive
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- visualization of RNA-seq datasets based on Principal Components
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- Analysis. The methods provided allow for quick information
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- extraction and effective data exploration. A Shiny application
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- encapsulates the whole analysis.
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+Description: This package provides functionality for interactive visualization
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+ of RNA-seq datasets based on Principal Components Analysis. The methods provided
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+ allow for quick information extraction and effective data exploration. A Shiny
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+ application encapsulates the whole analysis.
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License: MIT + file LICENSE
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LazyData: TRUE
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-Imports: DESeq2, SummarizedExperiment, GenomicRanges, IRanges,
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- S4Vectors, genefilter, ggplot2 (>= 2.0.0), d3heatmap, scales,
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- NMF, plyr, topGO, limma, GOstats, GO.db, AnnotationDbi, shiny
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- (>= 0.12.0), shinydashboard, shinyBS, ggrepel, DT, shinyAce,
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- threejs, biomaRt, pheatmap, knitr, rmarkdown, base64enc,
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- tidyr, grDevices, methods
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-Suggests: testthat, BiocStyle, airway, org.Hs.eg.db, htmltools
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+Imports:
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+ DESeq2,
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+ SummarizedExperiment,
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+ GenomicRanges,
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+ IRanges,
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+ S4Vectors,
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+ genefilter,
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+ ggplot2 (>= 2.0.0),
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+ d3heatmap,
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+ scales,
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+ NMF,
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+ plyr,
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+ topGO,
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+ limma,
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+ GOstats,
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+ GO.db,
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+ AnnotationDbi,
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+ shiny (>= 0.12.0),
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+ shinydashboard,
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+ shinyBS,
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+ ggrepel,
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+ DT,
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+ shinyAce,
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+ threejs,
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+ biomaRt,
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+ pheatmap,
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+ knitr,
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+ rmarkdown,
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+ base64enc,
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+ tidyr,
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+ grDevices,
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+ methods
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+Suggests:
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+ testthat,
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+ BiocStyle,
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+ airway,
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+ org.Hs.eg.db,
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+ htmltools
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URL: https://github.com/federicomarini/pcaExplorer,
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- https://federicomarini.github.io/pcaExplorer/
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+ https://federicomarini.github.io/pcaExplorer/
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BugReports: https://github.com/federicomarini/pcaExplorer/issues
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biocViews: ImmunoOncology, Visualization, RNASeq, DimensionReduction,
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- PrincipalComponent, QualityControl, GUI, ReportWriting
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+ PrincipalComponent, QualityControl, GUI, ReportWriting
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VignetteBuilder: knitr
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RoxygenNote: 6.1.1
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Encoding: UTF-8
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NeedsCompilation: no
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-Author: Federico Marini [aut, cre]
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