# Generated by roxygen2 (4.0.0): do not edit by hand
 
 export(create_db)
 export(makeCalls)
 export(makePeptideSet)
 export(normalizeArray)
 export(plotArrayImage)
 export(plotArrayResiduals)
 export(restab)
 export(shinyPepStat)
 export(slidingMean)
 export(summarizePeptides)
 exportClasses(peptideSet)
 exportMethods("[")
 exportMethods("clade")
 exportMethods("end")
 exportMethods("featureID")
 exportMethods("pepZscore")
 exportMethods("pepZscore<-")
 exportMethods("peptide")
 exportMethods("peptide<-")
 exportMethods("position")
 exportMethods("ranges")
 exportMethods("ranges<-")
 exportMethods("show")
 exportMethods("start")
 exportMethods("subset")
 exportMethods("summary")
 exportMethods("values")
 exportMethods("width")
 import(data.table)
 import(methods)
 importClassesFrom(Biobase,ExpressionSet)
 importClassesFrom(Biobase,Versioned)
 importClassesFrom(Biobase,VersionedBiobase)
 importClassesFrom(Biobase,eSet)
 importClassesFrom(GenomicRanges,GRanges)
 importClassesFrom(GenomicRanges,GRangesList)
 importClassesFrom(IRanges,IRanges)
 importFrom(Biobase,"exprs<-")
 importFrom(Biobase,"pData<-")
 importFrom(Biobase,"preproc<-")
 importFrom(Biobase,"sampleNames<-")
 importFrom(Biobase,ExpressionSet)
 importFrom(Biobase,assayData)
 importFrom(Biobase,experimentData)
 importFrom(Biobase,exprs)
 importFrom(Biobase,pData)
 importFrom(Biobase,phenoData)
 importFrom(Biobase,preproc)
 importFrom(Biobase,protocolData)
 importFrom(Biobase,rowMedians)
 importFrom(Biobase,sampleNames)
 importFrom(GenomicRanges,GRanges)
 importFrom(GenomicRanges,GRangesList)
 importFrom(GenomicRanges,seqnames)
 importFrom(IRanges,IRanges)
 importFrom(IRanges,space)
 importFrom(fields,smooth.2d)
 importFrom(ggplot2,aes_string)
 importFrom(ggplot2,element_blank)
 importFrom(ggplot2,geom_segment)
 importFrom(ggplot2,geom_tile)
 importFrom(ggplot2,ggplot)
 importFrom(ggplot2,ggtitle)
 importFrom(ggplot2,scale_fill_gradient2)
 importFrom(ggplot2,theme)
 importFrom(limma,backgroundCorrect)
 importFrom(limma,read.maimages)
 importFrom(plyr,ddply)
 importFrom(tools,file_ext)
 importFrom(tools,file_path_sans_ext)
 importMethodsFrom(GenomicRanges,"mcols<-")
 importMethodsFrom(GenomicRanges,as.data.frame)
 importMethodsFrom(GenomicRanges,mcols)
 importMethodsFrom(GenomicRanges,names)
 importMethodsFrom(IRanges,"ranges<-")
 importMethodsFrom(IRanges,"values<-")
 importMethodsFrom(IRanges,cbind)
 importMethodsFrom(IRanges,lapply)
 importMethodsFrom(IRanges,ranges)
 importMethodsFrom(IRanges,rbind)
 importMethodsFrom(IRanges,unlist)
 importMethodsFrom(IRanges,values)
 importMethodsFrom(IRanges,width)